Chih-Ying Lin wrote:
Hi
There is no domain decomposition with Gromacs 3.3.3.
What MPI based on with Gromacs 3.3.3?
3.x uses a particle-based decomposition. There's not much documentation
of it. Basically the system gets sliced up spatially and distributed to
the processes. You can get a version of the same algorithm in 4.x with
mdrun -pd
Mark
--
gmx-users mailing list gmx-users@gromacs.org
http://lists.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at http://www.gromacs.org/search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to gmx-users-requ...@gromacs.org.
Can't post? Read http://www.gromacs.org/mailing_lists/users.php
