jorge_quint...@ciencias.uis.edu.co wrote:
Hello Chanel
Could you send a copy of the PDB file. I think that the error is related
with label atoms included in each force fiel parameter.
More likely this is yet another case of a common misconception about how to use
Gromacs. Specifically, the first error message located under the pdb2gmx
heading here:
http://www.gromacs.org/Documentation/Errors
-Justin
See you.
Hello,
I have recently made a pdb file using the Dundee PRODRG server.
However, when I try to use this pdb in gromacs, I receive an error message
that states: "DRG is not in the topology database." I have tried to use
the
available tutorial to solve this issue, but with not much success. Could
anyone give me a step by step procedure so that I can use the pdb I have
made
using PRODRG?
Thanks,
Chanel King
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--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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