nicegromacs wrote:
CAG -CAM
Defining a bond to a previous residue will certainly fail for at least one
terminus of your polymer chain. You may find this post useful:
http://oldwww.gromacs.org/pipermail/gmx-users/2009-March/040125.html
If things still aren't working, please post the structure file, as well, and
identify the bond that is being formed that shouldn't.
-Justin
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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