nitu sharma wrote:
Dear all,
i am trying to simulation of dna-protein complex
using gromacs with amber port . I am using amber99 port with
gromacs-4.0.3 version. I am facing problem in running pdb2gmx command
.The error comes like this-
-------------------------------------------------------
Program pdb2gmx, VERSION 4.0.3
Source code file: resall.c, line: 426
Fatal error:
Residue 'T' not found in residue topology database
Can anyone suggest me how can I overcome this problem .
http://oldwiki.gromacs.org/index.php/Errors#Residue_.27XXX.27_not_found_in_residue_topology_database
-Justin
Thanks a lot in advance.
Nitu sharma
Jawaherlal Nehru University
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--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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