Hi Bala, My guess is you're running with position restraints on. Check the manual. And while you're at it, google for "how to ask questions the smart way".
Tsjerk On Fri, Jan 16, 2009 at 3:00 PM, bala ms <ms_baa...@yahoo.co.in> wrote: > Hi > I am new to Gromacs, I am using V3.3.3. I have run the MD simulation > (using explicit solvent) for 1ns for my protein of interest and also the > examples which has given in the Manual. > I am getting same kind of graph for the both proteins by plotting CA vs > time. The graph shows RMSD value lies in the range of 0.03-0.02. I dunno > where i am missing or is there any problem in v. 3.3.3 > thanks > Bala > > > > ________________________________ > Add more friends to your messenger and enjoy! Invite them now. > _______________________________________________ > gmx-users mailing list gmx-users@gromacs.org > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > -- Tsjerk A. Wassenaar, Ph.D. Junior UD (post-doc) Biomolecular NMR, Bijvoet Center Utrecht University Padualaan 8 3584 CH Utrecht The Netherlands P: +31-30-2539931 F: +31-30-2537623 _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
