hello everyone, for doing peptide with usual amino acid simulation. i m bringing my *.pdb file from insightII as i dont know any other tool or software from where i can get any pdb file (model peptide-Eg. Ac-Ala-Ala-Ala-Ala-NHMe).But when i put my pdb file in gromacs by using pdb2gmx. it give error that no C is present at 6 NH2 position.
tell me what to do. either tell me the name of free software or tool from where i can get the pdb of model peptide. tell me one more thing that whether gromacs only take those pdb's which are converted by babel???? Please help me out
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