Hi,

i want to calculate rmsd on homologous protein structures that have different 
residue numbers. 
As far as i understood g_rms gives only rmsd of the same structure in different 
configurations, but it doesn't fit homologous protein structures? 

In Option -f2 can i provide a trajectory of a homologous protein structure of 
it also have to be a reserence structure trajectory (which is provided in -s)?

many many thanks
Tatsiana 
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