dear groacs users I want to calculate r.m.s.i.p for exploring convergence of my system and motions of two different proteins,i divided my trajectory in two equal parts and did g_covar for getting eigenvectors and corresponding eigenvector trjectory as trr file for C-alpha atom of 10 eigenvectors.even i know how to calculate RMSIP by trr file in Matlab but it is more time taking process because my system is quite large (509 residues).I need a script or tools to calculate it. before writting this mail i searched in gmx- mailing list and i did not find any script for same. need your help!
thanks in advance. sanjay upadhyay research scholar proein dynamics lab IIT bombay India _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
