I think, setting tc groups = system will solve this issue.
On Thu, 17 Jul 2008 Justin A.Lemkul wrote : >For warnings/errors, etc. please check the archive and wiki before posting. I >just responded to a similar issue a few days ago: > >http://www.gromacs.org/pipermail/gmx-users/2008-June/034786.html > >-Justin > >[EMAIL PROTECTED] wrote: >>Hi all >>I have installed gromacs 3.3.3 in one of my 32 machine fedora core 2. >>so check i tried to to do speptide tutorial in >>/usr/local/gromacs/share/gromacs/tutor/speptide >> >>But when i m running grompp for position restraint with the command >>grompp -f pr -o pr -c after_em -r after_em -p speptide >> >>i get the following warning >> >> WARNING 1 [file aminoacids.dat, line 1]: >> T-Coupling group Protein has fewer than 10% of the atoms (191 out of >> 2741) >> Maybe you want to try Protein and Non-Protein instead? >> >>I tried to change SOL with non protein but getting the same warning. is it >>ok to go further with this warning >> >>When i did grompp for full MD with the command >> >>grompp -v -f full -o full -c after_pr -p speptide >> >>again i m getting the same warning >> >>WARNING 1 [file aminoacids.dat, line 1]: >> T-Coupling group Protein has fewer than 10% of the atoms (191 out of >> 2741) >> Maybe you want to try Protein and Non-Protein instead? >> >> >>I tried to change SOL with non protein but getting the same warning. >> >>I don't know what to do now and how can i overcome this, if anyone could >>help me. >> >>Thanks >> >>ALKA
_______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
