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• 2013/09/24 Re: [gmx-users] Regarding g_sgangle index file Teemu Murtola
• 2013/09/24 [gmx-users] ensemble selection fatemeh ramezani
• 2013/09/24 [gmx-users] walls combining with the PME and pressure coupling 彭春望
• 2013/09/24 [gmx-users] Use of walls combining with the PME and pressure coupling (new) p . chunwang
• 2013/09/24 [gmx-users] periodic surface minimization escajarro
• 2013/09/24 [gmx-users] Re:gmx-users Digest, Vol 113, Issue 108 aixintiankong
• 2013/09/23 Re: [gmx-users] Regarding g_sgangle index file Venkat Reddy
• 2013/09/23 [gmx-users] Re: Fatal Error: Residue 'DMP' not found in residue topology database Santhosh Kumar Nagarajan
• 2013/09/23 Re: [gmx-users] The charge of cofactor and ligand Justin Lemkul
• 2013/09/23 Re: [gmx-users] Re: Charmm 36 forcefield with verlet cut-off scheme Justin Lemkul
• 2013/09/23 [gmx-users] Re: Re: Re: Calculation of binding enthalpy in Jong Wha Lee
• 2013/09/23 [gmx-users] Re:gmx-users Digest, Vol 113, Issue 106 aixintiankong
• 2013/09/23 Re: [gmx-users] confusion about implicint solvent David van der Spoel
• 2013/09/23 Re: [gmx-users] confusion about implicint solvent Mark Abraham
• 2013/09/23 [gmx-users] Re: Charmm 36 forcefield with verlet cut-off scheme akk5r
• 2013/09/23 [gmx-users] g_energy Marcelo Vanean
• 2013/09/23 Re: [gmx-users] trjconv and "Floating point exception" Dr. Vitaly Chaban
• 2013/09/23 [gmx-users] RE : gmx-users Digest, Vol 113, Issue 106 ABEL Stephane 175950
• 2013/09/23 Re: [gmx-users] confusion about implicint solvent Justin Lemkul
• 2013/09/23 Re: [gmx-users] script to convert the TIP3P water model into TIP4(P)/2005 Justin Lemkul
• 2013/09/23 Re: [gmx-users] confusion about implicint solvent Szilárd Páll
• 2013/09/23 Re: [gmx-users] Re: Charmm 36 forcefield with verlet cut-off scheme Justin Lemkul
• 2013/09/23 [gmx-users] confusion about implicint solvent Francesco
• 2013/09/23 Re: [gmx-users] Regarding g_sgangle index file Teemu Murtola
• 2013/09/23 Re: [gmx-users] The charge of cofactor and ligand Mark Abraham
• 2013/09/23 Re: [gmx-users] trjconv and "Floating point exception" Justin Lemkul
• 2013/09/23 [gmx-users] The charge of cofactor and ligand aixintiankong
• 2013/09/23 [gmx-users] script to convert the TIP3P water model into TIP4(P)/2005 ABEL Stephane 175950
• 2013/09/23 Re: [gmx-users] energy minimization Mark Abraham
• 2013/09/23 Re: [gmx-users] Funky output trajectory (lines all over the place) Mark Abraham
• 2013/09/23 Re: [gmx-users] Re: Re: Calculation of binding enthalpy in vacuum Dr. Vitaly Chaban
• 2013/09/23 [gmx-users] Re: Re: Calculation of binding enthalpy in vacuum Jong Wha Lee
• 2013/09/23 Re: [gmx-users] trjconv and "Floating point exception" Justin Lemkul
• 2013/09/23 Re: [gmx-users] script to convert the TIP3P water model into TIP4 Justin Lemkul
• 2013/09/23 Re: [gmx-users] Re: gmx-users Digest, Vol 113, Issue 101 Justin Lemkul
• 2013/09/23 Re: [gmx-users] energy minimization Justin Lemkul
• 2013/09/23 [gmx-users] trjconv and "Floating point exception" Dr. Vitaly Chaban
• 2013/09/23 [gmx-users] script to convert the TIP3P water model into TIP4 ABEL Stephane 175950
• 2013/09/23 Re: [gmx-users] script to convert the TIP3P water model into TIP4P Dr. Vitaly Chaban
• 2013/09/23 Re: [gmx-users] Funky output trajectory (lines all over the place) Dr. Vitaly Chaban
• 2013/09/23 Re: [gmx-users] Calculation of binding enthalpy in vacuum Dr. Vitaly Chaban
• 2013/09/23 [gmx-users] script to convert the TIP3P water model into TIP4P ABEL Stephane 175950
• 2013/09/23 [gmx-users] Calculation of binding enthalpy in vacuum Jong Wha Lee
• 2013/09/23 [gmx-users] Re: gmx-users Digest, Vol 113, Issue 101 Jonathan Saboury
• 2013/09/23 [gmx-users] Funky output trajectory (lines all over the place) Jonathan Saboury
• 2013/09/23 [gmx-users] energy minimization marzieh dehghan
• 2013/09/22 Re: [gmx-users] Re: No such moleculetype SOL Justin Lemkul
• 2013/09/22 [gmx-users] Re: No such moleculetype SOL Jonathan Saboury
• 2013/09/22 Re: [gmx-users] grompp Warning: atom name 20 in p2.top and p2.pdb does not match Justin Lemkul
• 2013/09/22 Re: [gmx-users] grompp Warning: atom name 20 in p2.top and p2.pdb does not match Nilesh Dhumal
• 2013/09/22 Re: [gmx-users] grompp Warning: atom name 20 in p2.top and p2.pdb does not match Justin Lemkul
• 2013/09/22 Re: [gmx-users] grompp Warning: atom name 20 in p2.top and p2.pdb does not match Nilesh Dhumal
• 2013/09/22 Re: [gmx-users] grompp Warning: atom name 20 in p2.top and p2.pdb does not match Justin Lemkul
• 2013/09/22 Re: [gmx-users] grompp Warning: atom name 20 in p2.top and p2.pdb does not match Justin Lemkul
• 2013/09/22 [gmx-users] grompp Warning: atom name 20 in p2.top and p2.pdb does not match Nilesh Dhumal
• 2013/09/22 Re: [gmx-users] restarting the crashed run Mark Abraham
• 2013/09/22 Re: [gmx-users] restarting the crashed run Nidhi Katyal
• 2013/09/21 Re: [gmx-users] emstep unit Tsjerk Wassenaar
• 2013/09/21 Re: [gmx-users] Confuse about trjconv tool Justin Lemkul
• 2013/09/21 [gmx-users] Confuse about trjconv tool Caizk
• 2013/09/21 Re: [gmx-users] Re: No such moleculetype SOL Justin Lemkul
• 2013/09/21 [gmx-users] Re: No such moleculetype SOL Jonathan Saboury
• 2013/09/21 Re: [gmx-users] restarting the crashed run Justin Lemkul
• 2013/09/21 Re: [gmx-users] emstep unit Justin Lemkul
• 2013/09/21 [gmx-users] restarting the crashed run Nidhi Katyal
• 2013/09/21 Re: [gmx-users] No such moleculetype SOL Mark Abraham
• 2013/09/21 [gmx-users] No such moleculetype SOL Jonathan Saboury
• 2013/09/21 [gmx-users] emstep unit Atila Petrosian
• 2013/09/21 Re: [gmx-users] emstep unit Justin Lemkul
• 2013/09/21 [gmx-users] emstep unit Atila Petrosian
• 2013/09/21 [gmx-users] Use of walls combining with the PME and pressure coupling p . chunwang
• 2013/09/21 Re: [gmx-users] jwe1050i + jwe0019i errors = SIGSEGV (Fujitsu) Mark Abraham
• 2013/09/21 Re: [gmx-users] jwe1050i + jwe0019i errors = SIGSEGV (Fujitsu) James
• 2013/09/21 Re: [gmx-users] Re: Minimum distance periodic images, protein simulation Mark Abraham
• 2013/09/21 [gmx-users] Re: Minimum distance periodic images, protein simulation aksharma
• 2013/09/20 Re: [gmx-users] Minimum distance periodic images, protein simulation Justin Lemkul
• 2013/09/20 Re: [gmx-users] Broken lipid molecules Justin Lemkul
• 2013/09/20 [gmx-users] Broken lipid molecules Rama
• 2013/09/20 [gmx-users] Minimum distance periodic images, protein simulation Arun Sharma
• 2013/09/20 [gmx-users] Re: Significant slowdown in 4.6? (4.6.3) Jonathan Saboury
• 2013/09/20 [gmx-users] Significant slowdown in 4.6? (4.6.3) Jonathan Saboury
• 2013/09/20 Re: [gmx-users] g_covar average.pdb calculation Tsjerk Wassenaar
• 2013/09/20 [gmx-users] g_covar average.pdb calculation Deniz Aydin
• 2013/09/20 Re: [gmx-users] Re: Charmm 36 forcefield with verlet cut-off scheme Mark Abraham
• 2013/09/20 Re: [gmx-users] Re: grompp for minimization: note & warning Mark Abraham
• 2013/09/20 Re: [gmx-users] MPI runs on a local computer Mark Abraham
• 2013/09/20 [gmx-users] Re: grompp for minimization: note & warning shahab shariati
• 2013/09/20 Re: [gmx-users] Fatal Error: Residue 'DMP' not found in residue topology database Justin Lemkul
• 2013/09/20 Re: [gmx-users] MPI runs on a local computer Carsten Kutzner
• 2013/09/20 [gmx-users] RE: MPI runs on a local computer Xu, Jianqing
• 2013/09/19 [gmx-users] Fatal Error: Residue 'DMP' not found in residue topology database Santhosh Kumar Nagarajan
• 2013/09/19 Re: [gmx-users] Re: Charmm 36 forcefield with verlet cut-off scheme Justin Lemkul
• 2013/09/19 Re: [gmx-users] changing atom types versus adding dihedrals to atom types Justin Lemkul
• 2013/09/19 Re: [gmx-users] changing atom types versus adding dihedrals to atom types Justin Lemkul
• 2013/09/19 [gmx-users] Re: Charmm 36 forcefield with verlet cut-off scheme akk5r
• 2013/09/19 Re: [gmx-users] changing atom types versus adding dihedrals to atom types Rafael I. Silverman y de la Vega
• 2013/09/19 Re: [gmx-users] changing atom types versus adding dihedrals to atom types Rafael I. Silverman y de la Vega
• 2013/09/19 Re: [gmx-users] SDFs memory allocation error Justin Lemkul
• 2013/09/19 Re: [gmx-users] Charmm 36 forcefield with verlet cut-off scheme Justin Lemkul
• 2013/09/19 [gmx-users] SDFs memory allocation error Marta Batista
• 2013/09/19 [gmx-users] forcefield and setting fatemeh ramezani
• 2013/09/19 [gmx-users] Charmm 36 forcefield with verlet cut-off scheme akk5r
• 2013/09/19 Re: [gmx-users] forcefield and setting Justin Lemkul
• 2013/09/19 Re: [gmx-users] Regarding g_sgangle index file Venkat Reddy
• 2013/09/19 [gmx-users] Re: grompp for minimization: note & warning shahab shariati
• 2013/09/19 Re: [gmx-users] Re: grompp for minimization: note & warning Tsjerk Wassenaar
• 2013/09/19 [gmx-users] protein unfolding in water fatemeh ramezani
• 2013/09/19 Re: [gmx-users] modify nsteps in an existing tpr file Guanglei Cui
• 2013/09/19 [gmx-users] Problem with http://www.gromacs.org/Documentation/Tutorials page Ray Sheppard
• 2013/09/19 Re: [gmx-users] Problem with http://www.gromacs.org/Documentation/Tutorials page Justin Lemkul
• 2013/09/19 Re: [gmx-users] protein unfolding in water Justin Lemkul
• 2013/09/19 Re: [gmx-users] performance issue with the parallel implementation of gromacs ashutosh srivastava
• 2013/09/19 [gmx-users] MPI runs on a local computer Xu, Jianqing
• 2013/09/19 Re: [gmx-users] Re: Need protein-ligand free energy calculation tutorial Michael Shirts
• 2013/09/19 Re: [gmx-users] control atom in .hdb file Justin Lemkul
• 2013/09/19 Re: [gmx-users] Selecting certain types of atoms from trajectory file with C++ code Justin Lemkul
• 2013/09/19 Re: [gmx-users] modify nsteps in an existing tpr file Mark Abraham
• 2013/09/19 [gmx-users] control atom in .hdb file xiao
• 2013/09/19 Re: [gmx-users] performance issue with the parallel implementation of gromacs Carsten Kutzner
• 2013/09/19 [gmx-users] Re: Need protein-ligand free energy calculation tutorial hsp85
• 2013/09/19 Re: [gmx-users] Need protein-ligand free energy calculation tutorial Sergey Filkin
• 2013/09/18 Re: [gmx-users] Difficulties with MPI in gromacs 4.6.3 Kate Stafford
• 2013/09/18 [gmx-users] Need protein-ligand free energy calculation tutorial Naga Sundar
• 2013/09/18 [gmx-users] performance issue with the parallel implementation of gromacs ashutosh srivastava
• 2013/09/18 [gmx-users] Re: gmx-users Digest, Vol 113, Issue 81 Jernej Zidar
• 2013/09/18 [gmx-users] Selecting certain types of atoms from trajectory file with C++ code Zhikun
• 2013/09/18 Re: [gmx-users] modify nsteps in an existing tpr file Guanglei Cui
• 2013/09/18 Re: [gmx-users] modify nsteps in an existing tpr file Mark Abraham
• 2013/09/18 Re: [gmx-users] modify nsteps in an existing tpr file Guanglei Cui
• 2013/09/18 Re: [gmx-users] modify nsteps in an existing tpr file Mark Abraham
• 2013/09/18 Re: [gmx-users] modify nsteps in an existing tpr file Guanglei Cui
• 2013/09/18 Re: [gmx-users] BGQ compilation with verlet kernels: #include file "kernel_impl.h" not found. Mark Abraham
• 2013/09/18 [gmx-users] Re: periodic molecule Valentina
• 2013/09/18 Re: [gmx-users] modify nsteps in an existing tpr file Mark Abraham
• 2013/09/18 [gmx-users] Re: periodic molecule Valentina
• 2013/09/18 Re: [gmx-users] Re: periodic molecule Justin Lemkul
• 2013/09/18 [gmx-users] Re: periodic molecule Valentina
• 2013/09/18 Re: [gmx-users] segfault on Gromacs 4.6.3 (cuda) Guanglei Cui
• 2013/09/18 Re: [gmx-users] modify nsteps in an existing tpr file Guanglei Cui
• 2013/09/18 Re: [gmx-users] Re: periodic molecule Justin Lemkul
• 2013/09/18 [gmx-users] Re: periodic molecule Valentina
• 2013/09/18 Re: [gmx-users] Error while simulating Protein in SDS/Water Mark Abraham
• 2013/09/18 [gmx-users] Error while simulating Protein in SDS/Water naresh_sssihl
• 2013/09/18 Re: [gmx-users] Re: periodic molecule Justin Lemkul
• 2013/09/18 [gmx-users] Help g_energy Marcelo Vanean
• 2013/09/18 [gmx-users] Re: periodic molecule Valentina
• 2013/09/18 Re: [gmx-users] Re: periodic molecule Justin Lemkul
• 2013/09/18 [gmx-users] Re: periodic molecule Valentina
• 2013/09/18 [gmx-users] Re: Why do you delete the messages? Valentina
• 2013/09/18 Re: [gmx-users] periodic molecule Justin Lemkul
• 2013/09/18 [gmx-users] SHAKE or LINCS for free energy computations. hsp85
• 2013/09/18 [gmx-users] periodic molecule Valentina
• 2013/09/18 Re: [gmx-users] Re: grompp for minimization: note & warning Tsjerk Wassenaar
• 2013/09/18 [gmx-users] Re: grompp for minimization: note & warning shahab shariati
• 2013/09/17 Re: [gmx-users] Re: grompp for minimization: note & warning Tsjerk Wassenaar
• 2013/09/17 Re: [gmx-users] virtual sites in gromacs Tsjerk Wassenaar
• 2013/09/17 [gmx-users] virtual sites in gromacs Neha Gandhi
• 2013/09/17 Re: [gmx-users] changing atom types versus adding dihedrals to atom types Justin Lemkul
• 2013/09/17 Re: [gmx-users] changing atom types versus adding dihedrals to atom types Rafael I. Silverman y de la Vega
• 2013/09/17 [gmx-users] BGQ compilation with verlet kernels: #include file "kernel_impl.h" not found. Christopher Neale
• 2013/09/17 Re: [gmx-users] Constraining a part of the system HANNIBAL LECTER
• 2013/09/17 Re: [gmx-users] modify nsteps in an existing tpr file Mark Abraham
• 2013/09/17 Re: [gmx-users] BGQ compilation with verlet kernels: #include file "kernel_impl.h" not found. Mark Abraham
• 2013/09/17 Re: [gmx-users] Constraining a part of the system Dr. Vitaly Chaban
• 2013/09/17 [gmx-users] BGQ compilation with verlet kernels: #include file "kernel_impl.h" not found. Christopher Neale
• 2013/09/17 Re: [gmx-users] Constraining a part of the system HANNIBAL LECTER
• 2013/09/17 Re: [gmx-users] modify nsteps in an existing tpr file Guanglei Cui
• 2013/09/17 Re: [gmx-users] Constraining a part of the system HANNIBAL LECTER
• 2013/09/17 Re: [gmx-users] Constraining a part of the system HANNIBAL LECTER
• 2013/09/17 Re: [gmx-users] Constraining a part of the system Justin Lemkul
• 2013/09/17 Re: [gmx-users] modify nsteps in an existing tpr file Mark Abraham
• 2013/09/17 [gmx-users] modify nsteps in an existing tpr file Guanglei Cui
• 2013/09/17 [gmx-users] grompp for minimization: note & warning shahab shariati
• 2013/09/17 Re: [gmx-users] Regarding g_sgangle index file Teemu Murtola
• 2013/09/17 RE: [gmx-users] g_current Florian Dommert
• 2013/09/17 Re: [gmx-users] Constraining a part of the system Justin Lemkul
• 2013/09/17 [gmx-users] Constraining a part of the system HANNIBAL LECTER
• 2013/09/17 Re: [gmx-users] Constraining a part of the system rahul seth
• 2013/09/17 Re: [gmx-users] Re: grompp for minimization: note & warning Justin Lemkul
• 2013/09/17 [gmx-users] Re: grompp for minimization: note & warning shahab shariati
• 2013/09/17 Re: [gmx-users] Re: grompp for minimization: note & warning Justin Lemkul
• 2013/09/17 [gmx-users] Re: grompp for minimization: note & warning shahab shariati
• 2013/09/17 Re: [gmx-users] A charge group moved too far between two domain decomposition steps Justin Lemkul
• 2013/09/17 Re: [gmx-users] Re: grompp for minimization: note & warning Justin Lemkul
• 2013/09/17 [gmx-users] A charge group moved too far between two domain decomposition steps mabbasi
• 2013/09/17 [gmx-users] Re: grompp for minimization: note & warning shahab shariati
• 2013/09/17 [gmx-users] g_analyze afsaneh maleki
• 2013/09/17 Re: Fw: Fw: [gmx-users] How to restart the crashed run Justin Lemkul
• 2013/09/17 Fw: Fw: [gmx-users] How to restart the crashed run Mahboobeh Eslami
• 2013/09/17 Re: [gmx-users] Re: grompp for minimization: note & warning Justin Lemkul
• 2013/09/17 Fw: Fw: [gmx-users] How to restart the crashed run Mahboobeh Eslami
• 2013/09/17 [gmx-users] Re: grompp for minimization: note & warning shahab shariati
• 2013/09/17 Re: Fw: [gmx-users] How to restart the crashed run Mark Abraham
• 2013/09/17 Fw: [gmx-users] How to restart the crashed run Mahboobeh Eslami
• 2013/09/17 Re: [gmx-users] How to restart the crashed run Mark Abraham
• 2013/09/17 [gmx-users] How to restart the crashed run Mahboobeh Eslami
• 2013/09/16 Re: [gmx-users] How to restart the crashed run Mark Abraham
• 2013/09/16 Re: [gmx-users] Re: Seeking solution for the error "Atom OXT in residue TRP 323 was not found in rtp entry TRP with 24 atoms while sorting atoms". Mark Abraham
• 2013/09/16 Re: [gmx-users] Standard errors Mark Abraham
• 2013/09/16 [gmx-users] Re: Seeking solution for the error "Atom OXT in residue TRP 323 was not found in rtp entry TRP with 24 atoms while sorting atoms". Santhosh Kumar Nagarajan

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