yes , I had gone through the manual, but is that all? I mean to say that even
if the protein
suffers from high solvent forces (though the energy minimisation can be done
over the
whole system ie protein in solvated state) that may not pose much of a problem
, in case we
simulate for sufficiently long time.
I am sorry if I understood wrong.
Sarbani
On Tue, 23 Oct 2007 Mark Abraham wrote :
>sarbani chattopadhyay wrote:
>> Hi,
>> I am new to the field of MD.I want to know what is the effectivity of
>> position restricted
MD
>>ie. where is the advantage of doing Position restricted MD.I have a small
>>peptide of 3
>>reidues.Is it necessary to do a Position restricted MD. What difference will
>>it make?
>> I may sound very unintelligent but any
>> suggestions are welcome.
>
>Have you checked out the section on position restraints in the GROMACS manual?
>
>Mark
>_______________________________________________
>gmx-users mailing list gmx-users@gromacs.org
>http://www.gromacs.org/mailman/listinfo/gmx-users
>Please search the archive at http://www.gromacs.org/search before posting!
>Please don't post (un)subscribe requests to the list. Use the www interface or
>send it to
[EMAIL PROTECTED]
>Can't post? Read http://www.gromacs.org/mailing_lists/users.php
_______________________________________________
gmx-users mailing list gmx-users@gromacs.org
http://www.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at http://www.gromacs.org/search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to [EMAIL PROTECTED]
Can't post? Read http://www.gromacs.org/mailing_lists/users.php
