sarbani chattopadhyay wrote:
Hi, I am new to the field of MD.I want to know what is the effectivity of position restricted MD ie. where is the advantage of doing Position restricted MD.I have a small peptide of 3 reidues.Is it necessary to do a Position restricted MD. What difference will it make? I may sound very unintelligent but any suggestions are welcome.

Have you checked out the section on position restraints in the GROMACS manual?

Mark
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