> The third problem is what I think can be a BUG on 3.3.2. This warning doesn't > appear on 3.3.1: > > *WARNING 2 [file aminoacids.dat, line 1]: > * T-Coupling group protein has fewer than 10% of the atoms (2381 out of > * 36249) > * Maybe you want to try Protein and Non-Protein instead? > > I strongly think this is an error because in my MDP file I have explicitly: > * tc-grps = protein non-protein > > and because in the GROMPP out also appears: > * T-Coupling has 2 element(s): Protein Non-Protein
See http://wiki.gromacs.org/index.php/Errors#T-Coupling_group_XXX_has_fewer_than_10.25_of_the_atoms
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