Why not copy the coordinates of the channel in to th lipid's file?
Itamr.

mahbubeh zarrabi wrote:
Dear gmx_users

I am trying to insert one channel peptide in lipid
bilayer. I created two pdbs, bilayer.pdb and peptide.pdb . how can i were adjusted the peptide
coordinates using editconf to be at the desired
vertical position in the bilayer.
thanks


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--
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| Itamar Kass
| The Alexander Silberman
| Institute of Life Sciences
| Department of Biological Chemistry
| The Hebrew University, Givat-Ram
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