Beniamino Sciacca wrote:
Thanks very much!
So using g_energy I choose
LJ-SR:DNA1-DNA2
LJ-SR:DNA2-DNA3
LJ-SR:DNA1-DNA3
Adding these three terms I obtain the total interaction energy between
the DNA molecules, isn't it?
There is a lot of difference between LJ-SR..... and Coulomb-SR.
Which is the best method to estimate this interaction energy (LJ or
Coulomb)?
First work out what you mean by interaction energy. Then understand what
LJ-SR and Coulomb-SR mean (and likewise any other LJ and Coulomb
terms). Then you can answer your own question.
Mark
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