Figured out the problem. For some reason one thread is being taken up 90% by the system. If I run it with 6 threads it runs fast. Never experienced this on linux though, very curious.
Sorry if i wasted your time. -Jonathan Saboury On Fri, Sep 20, 2013 at 7:58 AM, Jonathan Saboury <jsab...@gmail.com> wrote: > I have a Intel i7-2630QM CPU @ 2.00GHz on my laptop with 4.6.3 installed > and a desktop with an i3-3220 with 4.5.5 installed. > > I am trying the same energy minimization on each of these machines. My > desktop takes a few seconds, my laptop takes hours. This doesn't make much > sense bc benchmarks indicated that my laptop should be faster. > > Only conclusion I can come up with is that it is the difference in > versions. Any other explanations? > > Here are the files I am using: http://www.sendspace.com/file/a1cdch > > List of commands used are found in: commands.txt > > I use the last command "mdrun -v -deffnm em" on each machine, and the > files were built with 4.6.3 (my laptop). > > If you need any more information please let me know. > > Thank you! > > -Jonathan > -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
