commit: da001fc52d309509f4bc99d41b8b147672e8ac33 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Mon Feb 20 18:51:04 2017 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Mon Feb 20 18:51:04 2017 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=da001fc5
sci-biology/VarScan: version bump Package-Manager: Portage-2.3.3, Repoman-2.3.1 sci-biology/VarScan/VarScan-2.4.3.ebuild | 35 ++++++++++++++++++++++++++++++++ 1 file changed, 35 insertions(+) diff --git a/sci-biology/VarScan/VarScan-2.4.3.ebuild b/sci-biology/VarScan/VarScan-2.4.3.ebuild new file mode 100644 index 000000000..3ef29a10c --- /dev/null +++ b/sci-biology/VarScan/VarScan-2.4.3.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit java-pkg-2 + +DESCRIPTION="Variant detection (germline, multi-sample, somatic mutations, CNA, SNP calls)" +HOMEPAGE="http://varscan.sourceforge.net/"; + +# binary +#https://github.com/dkoboldt/varscan/blob/master/VarScan.v2.4.3.jar +SRC_URI="https://github.com/dkoboldt/varscan/blob/master/VarScan.v2.4.3.source.jar?raw=true -> ${PN}.v${PV}.source.jar" + +LICENSE="Non-profit-OSL-3.0" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND=" + >=virtual/jdk-1.5:* + !sci-biology/VarScan-bin" +RDEPEND=">=virtual/jre-1.5:*" + +S="${WORKDIR}"/net/sf/varscan + +src_compile(){ + javac *.java +} + +src_install(){ + java-pkg_newjar "${DISTDIR}"/${PN}.v${PV}.source.jar ${PN}.source.jar + java-pkg_dolauncher VarScan +}
