commit: 1bcb9c9ae15bcf94afea702e9adddc459f11e576 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Mon Feb 20 18:45:05 2017 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Mon Feb 20 18:45:05 2017 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=1bcb9c9a
sci-biology/VarScan-bin: version bump Package-Manager: Portage-2.3.3, Repoman-2.3.1 sci-biology/VarScan-bin/VarScan-bin-2.4.3.ebuild | 32 ++++++++++++++++++++++++ 1 file changed, 32 insertions(+) diff --git a/sci-biology/VarScan-bin/VarScan-bin-2.4.3.ebuild b/sci-biology/VarScan-bin/VarScan-bin-2.4.3.ebuild new file mode 100644 index 000000000..ecf60c9ad --- /dev/null +++ b/sci-biology/VarScan-bin/VarScan-bin-2.4.3.ebuild @@ -0,0 +1,32 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit java-pkg-2 + +MY_PN="VarScan" +DESCRIPTION="Variant detection (germline, multi-sample, somatic mut., CNA), SNP" +HOMEPAGE="http://dkoboldt.github.io/varscan"; + +# binary +#http://downloads.sourceforge.net/project/varscan/VarScan.v2.3.7.jar +#SRC_URI="http://downloads.sourceforge.net/project/varscan/${PN}.v${PV}.jar"; +SRC_URI="https://github.com/dkoboldt/varscan/blob/master/${MY_PN}.v${PV}.jar?raw=true -> ${MY_PN}.v${PV}.jar" + +LICENSE="Non-profit-OSL-3.0" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND=" + >=virtual/jdk-1.5:*" +RDEPEND=">=virtual/jre-1.5:*" + +S="${WORKDIR}"/net/sf/varscan + +src_install(){ + java-pkg_newjar "${DISTDIR}"/${MY_PN}.v${PV}.jar ${MY_PN}.jar + java-pkg_dolauncher VarScan +}
