commit: 3503dcaaadb870f97b2719158c2fcd384f7d9660 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Tue May 5 14:48:17 2015 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Tue May 5 14:48:17 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=3503dcaa
sci-biology/prokka: new package Package-Manager: portage-2.2.18 sci-biology/prokka/ChangeLog | 9 +++++++++ sci-biology/prokka/metadata.xml | 9 +++++++++ sci-biology/prokka/prokka-1.11.ebuild | 31 +++++++++++++++++++++++++++++++ 3 files changed, 49 insertions(+) diff --git a/sci-biology/prokka/ChangeLog b/sci-biology/prokka/ChangeLog new file mode 100644 index 0000000..4f5235a --- /dev/null +++ b/sci-biology/prokka/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/prokka +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*prokka-1.11 (05 May 2015) + + 05 May 2015; Martin Mokrejs <mmokr...@fold.natur.cuni.cz> +metadata.xml, + +prokka-1.11.ebuild: + sci-biology/prokka: new package diff --git a/sci-biology/prokka/metadata.xml b/sci-biology/prokka/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/prokka/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>mmokr...@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/prokka/prokka-1.11.ebuild b/sci-biology/prokka/prokka-1.11.ebuild new file mode 100644 index 0000000..8fc53c5 --- /dev/null +++ b/sci-biology/prokka/prokka-1.11.ebuild @@ -0,0 +1,31 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +DESCRIPTION="Prokaryotic whole genome annotation pipeline" +HOMEPAGE="http://www.bioinformatics.net.au/software.prokka.shtml"; +SRC_URI="http://www.vicbioinformatics.com/prokka-"${PV}".tar.gz"; +# 360MB + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND} + sys-process/parallel + sci-biology/bioperl + sci-biology/prodigal + sci-biology/ncbi-tools++ + sci-biology/hmmer + sci-biology/infernal + sci-biology/exonerate + sci-biology/barrnap" +# >=hmmer-3.1 +# Aragorn +# RNAmmer +# SignalP >= 4.0 +# sequin
