commit: f60deed79963ffc7f97ea68afdfce84c891a2e58 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Tue May 5 14:39:21 2015 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Tue May 5 14:39:21 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=f60deed7
sci-biology/exomiser-bin: new package Package-Manager: portage-2.2.18 sci-biology/exomiser-bin/ChangeLog | 9 +++++++++ sci-biology/exomiser-bin/exomiser-bin-7.0.0.ebuild | 23 ++++++++++++++++++++++ sci-biology/exomiser-bin/metadata.xml | 9 +++++++++ 3 files changed, 41 insertions(+) diff --git a/sci-biology/exomiser-bin/ChangeLog b/sci-biology/exomiser-bin/ChangeLog new file mode 100644 index 0000000..0948caa --- /dev/null +++ b/sci-biology/exomiser-bin/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/exomiser-bin +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*exomiser-bin-7.0.0 (05 May 2015) + + 05 May 2015; Martin Mokrejs <mmokr...@fold.natur.cuni.cz> + +exomiser-bin-7.0.0.ebuild, +metadata.xml: + sci-biology/exomiser-bin: new package diff --git a/sci-biology/exomiser-bin/exomiser-bin-7.0.0.ebuild b/sci-biology/exomiser-bin/exomiser-bin-7.0.0.ebuild new file mode 100644 index 0000000..875db0e --- /dev/null +++ b/sci-biology/exomiser-bin/exomiser-bin-7.0.0.ebuild @@ -0,0 +1,23 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +DESCRIPTION="Annotate VCF files from whole-exome sequencing (Jannovar, UCSC KnownGenes, hg19)" +HOMEPAGE="http://www.sanger.ac.uk/resources/software/exomiser"; +SRC_URI="ftp://ftp.sanger.ac.uk/pub/resources/software/exomiser/downloads/exomiser/exomiser-cli-${PV}.BETA-distribution.zip"; +# 1.16GB ! + +LICENSE="GPL-3+" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND="sci-biology/Jannovar-bin" +RDEPEND="${DEPEND}" + +pkg_postinst(){ + einfo "Please download 3.7GB file from ftp://ftp.sanger.ac.uk/pub/resources/software/exomiser/downloads/exomiser/h2_db_dumps/exomiser-${PV}.BETA.h2.db.gz"; + einfo "and follow README.md" +} diff --git a/sci-biology/exomiser-bin/metadata.xml b/sci-biology/exomiser-bin/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/exomiser-bin/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>mmokr...@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata>
