commit: dc223750a96c8b733efbb85d5da6366f22f61a6d Author: Michał Górny <mgorny <AT> gentoo <DOT> org> AuthorDate: Tue Apr 22 11:45:47 2025 +0000 Commit: Michał Górny <mgorny <AT> gentoo <DOT> org> CommitDate: Thu May 1 11:36:04 2025 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=dc223750
sci-biology/bowtie: Remove old Signed-off-by: Michał Górny <mgorny <AT> gentoo.org> Part-of: https://github.com/gentoo/gentoo/pull/41697 Signed-off-by: Michał Górny <mgorny <AT> gentoo.org> sci-biology/bowtie/Manifest | 1 - sci-biology/bowtie/bowtie-2.4.4.ebuild | 55 ---------------------------------- 2 files changed, 56 deletions(-) diff --git a/sci-biology/bowtie/Manifest b/sci-biology/bowtie/Manifest index 274e5e7b9fb6..fb01787b9ecb 100644 --- a/sci-biology/bowtie/Manifest +++ b/sci-biology/bowtie/Manifest @@ -1,2 +1 @@ -DIST bowtie2-2.4.4-source.zip 10515984 BLAKE2B be4ceb9d3155d2a9a1f580e5032251b04b89ce0c8c9c89fc3551b34fe3bd71a683362488be7aad6daef24734c6f95c19223f20e67f198f745c4432381243039c SHA512 1b5dadd7e41b90bb9b05f50bfa171fe219cfd03aa8bb6f800de4baaffeb975eef6efc4fb8b49cb0d18833f74a1741cbe1556b87388f59188e04a55dcee6a02da DIST bowtie2-2.5.1-source.zip 10528859 BLAKE2B 9dc22bfef4b3a1cfaa606cb235acd1d7688015678d82e8ca80d3d7cf269e1f45d6cb60bc29eb334fb6f0c25d5afd8202e83a83e53668c8965857b8885d2692c8 SHA512 31cc642e318ab50e7ef6035a9c2095024d46d92a317011ed0c3ac3ccb3d427a13bf724d0158d29a4f1e07115ddcb85229b95bcb2d4351164fcadd6568293565f diff --git a/sci-biology/bowtie/bowtie-2.4.4.ebuild b/sci-biology/bowtie/bowtie-2.4.4.ebuild deleted file mode 100644 index de69bfadd825..000000000000 --- a/sci-biology/bowtie/bowtie-2.4.4.ebuild +++ /dev/null @@ -1,55 +0,0 @@ -# Copyright 2021-2024 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -PYTHON_COMPAT=( python3_10 ) - -inherit python-single-r1 toolchain-funcs - -DESCRIPTION="Popular short read aligner for Next-generation sequencing data" -HOMEPAGE="http://bowtie-bio.sourceforge.net/bowtie2/"; -SRC_URI="https://downloads.sourceforge.net/project/${PN}-bio/bowtie2/${PV}/bowtie2-${PV}-source.zip"; -S="${WORKDIR}/${PN}2-${PV}" - -LICENSE="GPL-3" -SLOT="2" -KEYWORDS="~amd64 ~x86" -IUSE="cpu_flags_x86_sse2 examples" -REQUIRED_USE="cpu_flags_x86_sse2 ${PYTHON_REQUIRED_USE}" - -RDEPEND=" - ${PYTHON_DEPS} - dev-lang/perl - sys-libs/zlib" -DEPEND="${RDEPEND}" -BDEPEND="app-arch/unzip" - -src_compile() { - emake \ - CXX="$(tc-getCXX)" \ - CXXFLAGS="" \ - CPPFLAGS="${CPPFLAGS}" \ - EXTRA_FLAGS="${LDFLAGS}" \ - RELEASE_FLAGS="${CXXFLAGS} -msse2" -} - -src_install() { - dobin bowtie2 bowtie2-* - - exeinto /usr/libexec/bowtie2 - doexe scripts/* - - HTML_DOCS=( doc/{manual.html,style.css} ) - einstalldocs - dodoc TUTORIAL - newman MANUAL bowtie2.1 - - python_fix_shebang "${ED}"/usr/bin/bowtie2-{build,inspect} - - if use examples; then - docinto examples - dodoc -r example/. - docompress -x /usr/share/doc/${PF}/examples - fi -}
