commit: ab5ef21e9f750245434d01cd030bf8da41bbfe0d Author: Michał Górny <mgorny <AT> gentoo <DOT> org> AuthorDate: Tue Apr 22 11:46:45 2025 +0000 Commit: Michał Górny <mgorny <AT> gentoo <DOT> org> CommitDate: Thu May 1 11:36:06 2025 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ab5ef21e
sci-mathematics/petsc: Remove old Signed-off-by: Michał Górny <mgorny <AT> gentoo.org> Part-of: https://github.com/gentoo/gentoo/pull/41697 Signed-off-by: Michał Górny <mgorny <AT> gentoo.org> sci-mathematics/petsc/Manifest | 3 - sci-mathematics/petsc/metadata.xml | 1 - sci-mathematics/petsc/petsc-3.16.0-r2.ebuild | 192 --------------------------- sci-mathematics/petsc/petsc-3.17.1-r2.ebuild | 190 -------------------------- 4 files changed, 386 deletions(-) diff --git a/sci-mathematics/petsc/Manifest b/sci-mathematics/petsc/Manifest index 3934ea9f285c..5adb5918f539 100644 --- a/sci-mathematics/petsc/Manifest +++ b/sci-mathematics/petsc/Manifest @@ -1,6 +1,3 @@ -DIST petsc-3.16.0-fftw-without-mpi.patch.bz2 5824 BLAKE2B 59615b1bbaf8ca1da92d7d193a45a2dd434f762cd741d711d4f408183a201a276ac3c968a3e7d740d19212120271701bce52bb7b0f4e311268f40915c81f9dcb SHA512 8e07dfe56a9150ce9a3a5ab8012657875ef84e6e7daa60560bbdd9062078c876a826057f3f3eaf1697ce046a82756ee6eb6a8b819eb51245367c9d5c8a72ee8e -DIST petsc-3.16.0.tar.gz 16748960 BLAKE2B 87f9fdb79a9c44e5f476fa4746ad0cbe72f3eda9f6039f2e4743105626701d7c8d6c010fdb9d89becf8619288d0b7a60c8bc4e2fc0793eac5b39030b02c04fd9 SHA512 5280032fb4ec4d058733788bb0ae674e7400565e204133bd10ed88a2965230ec7adeaca2d498267ce661377ca7e6f9d948992206b1d679587606cb422c004655 -DIST petsc-3.17.1.tar.gz 17082265 BLAKE2B de1bfe45f93e18e32181499e59912df9225c8e24d75f52e641e552fd43e4d5be48d549d284365b173aa93e51603f5b7740eaac0557ff8c7c96b370f4683257f6 SHA512 8c81cc148b1a899a55e54a013d61519ec7b44f98f7ae30c3f8d0e83ba285b23f4b4d9e2cd483c531d337bc41887e4079b727ba73676b1b653910140291e93575 DIST petsc-3.18.2.tar.gz 18409507 BLAKE2B 999d4fc80dedb5f9ce58333b6052b15ff499e3d5e4fee3e37639f5e3d2c5e86b514290d01e75b71795467436254d2cb8b05dac3d6252c80db898010bbed95544 SHA512 a8e9757144a20d61c004f54615821df7f9dbd920af71fea4674eb0fd1bf9f0b50dbc5c89aae285fef35a23daf67ba9647e479a6e92dbcd26e53fd8302735a47b DIST petsc-3.19.1.tar.gz 16659061 BLAKE2B 8c7b22e5f97756261a5d0e8b707670d55db53e209fd1e116a2adb517d42f5e8bd5ecc911c9e967b88a8dc60a2d872c1d7a279539c65064884b4cfbe856434ad3 SHA512 5b9b71599a95e2d82d18d5313c424a08eead0c10f27f40c82159839ef0fa8aeda88ddea693a12d58b8ac29a41c4138e8188a3c91d6af540196ee3a977cf9539d DIST petsc-3.19.2.tar.gz 16627765 BLAKE2B 1267db717989c3819f32ac6a62642054af2ac49d9e9276ffd4f0846d73e31ae4a5dcca4ad794b91cdb29463b7ec68040baa4e1cad99aaef8ab910ff7b64d7478 SHA512 f8feeb66fa8bd2406227be0e2cc2946485238362270d40e3f07dc89491177751f6bf680f51b70696bc30b677624c0e525c3fa9784eabdeb2337697ec56f63fc1 diff --git a/sci-mathematics/petsc/metadata.xml b/sci-mathematics/petsc/metadata.xml index 5d587548e725..f380b0943dce 100644 --- a/sci-mathematics/petsc/metadata.xml +++ b/sci-mathematics/petsc/metadata.xml @@ -18,7 +18,6 @@ <flag name="metis">Add support for metis (<pkg>sci-libs/parmetis</pkg>)</flag> <flag name="mumps">Add support for mumps (<pkg>sci-libs/mumps</pkg>)</flag> <flag name="scotch">Add support for scotch (<pkg>sci-libs/scotch</pkg>)</flag> - <flag name="sparse">Use suitesparse (<pkg>sci-libs/suitesparse</pkg>) including cholmod (<pkg>sci-libs/cholmod</pkg>) for sparse factorization</flag> <flag name="superlu">Use superlu (<pkg>sci-libs/superlu</pkg>) for preconditioning</flag> </use> <upstream> diff --git a/sci-mathematics/petsc/petsc-3.16.0-r2.ebuild b/sci-mathematics/petsc/petsc-3.16.0-r2.ebuild deleted file mode 100644 index 03c4e3d5a062..000000000000 --- a/sci-mathematics/petsc/petsc-3.16.0-r2.ebuild +++ /dev/null @@ -1,192 +0,0 @@ -# Copyright 1999-2024 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python3_10 ) - -inherit flag-o-matic fortran-2 python-any-r1 toolchain-funcs - -DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation" -HOMEPAGE="https://www.mcs.anl.gov/petsc/"; -SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${P}.tar.gz"; -SRC_URI+=" https://dev.gentoo.org/~sam/distfiles/${CATEGORY}/${PN}/${P}-fftw-without-mpi.patch.bz2"; - -LICENSE="BSD-2" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="afterimage boost complex-scalars cxx debug fftw - fortran hdf5 hypre mpi metis mumps scotch sparse superlu threads X" - -# hypre and superlu curretly exclude each other due to missing linking to hypre -# if both are enabled -REQUIRED_USE=" - afterimage? ( X ) - complex-scalars? ( !hypre !superlu ) - hdf5? ( mpi ) - hypre? ( cxx mpi !superlu ) - mumps? ( mpi scotch ) - scotch? ( mpi ) - superlu? ( !hypre ) -" - -RDEPEND=" - virtual/blas - virtual/lapack - afterimage? ( media-libs/libafterimage ) - boost? ( dev-libs/boost ) - fftw? ( sci-libs/fftw:3.0[mpi?] ) - hdf5? ( sci-libs/hdf5:=[mpi?] ) - hypre? ( >=sci-libs/hypre-2.18.0[mpi?] ) - metis? ( >=sci-libs/parmetis-4 ) - mpi? ( virtual/mpi[cxx?,fortran?] ) - mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack ) - scotch? ( sci-libs/scotch[mpi?] ) - sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 ) - superlu? ( >=sci-libs/superlu-5 ) - X? ( x11-libs/libX11 ) -" - -DEPEND="${RDEPEND} - ${PYTHON_DEPS} - virtual/pkgconfig - dev-build/cmake - sys-apps/which -" - -PATCHES=( - "${FILESDIR}"/${PN}-3.7.0-disable-rpath.patch - "${FILESDIR}"/${P}-fix_sandbox_violation.patch - "${WORKDIR}"/${P}-fftw-without-mpi.patch -) - -# petsc uses --with-blah=1 and --with-blah=0 to en/disable options -petsc_enable() { - use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0" -} -# add external library: -# petsc_with use_flag libname libdir -# petsc_with use_flag libname include linking_libs -petsc_with() { - local myuse p=${2:-${1}} - if use ${1}; then - myuse="--with-${p}=1" - if [[ $# -ge 4 ]]; then - myuse="${myuse} --with-${p}-include=${EPREFIX}${3}" - shift 3 - myuse="${myuse} --with-${p}-lib=$@" - else - myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}" - fi - else - myuse="--with-${p}=0" - fi - echo ${myuse} -} - -# select between configure options depending on use flag -petsc_select() { - use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4" -} - -src_configure() { - # bug 548498 - # PETSc runs mpi processes during configure that result in a sandbox - # violation by trying to open /proc/mtrr rw. This is not easy to - # mitigate because it happens in libpciaccess.so called by libhwloc.so, - # which is used by libmpi.so. - addpredict /proc/mtrr - # if mpi is built with knem support it needs /dev/knem too - addpredict /dev/knem - - # configureMPITypes with openmpi-2* insists on accessing the scaling - # governor rw. - addpredict /sys/devices/system/cpu/ - - # bug 771711 - # configureMPIEXEC and configureMPITypes access /dev/nvidiactl - addpredict /dev/nvidiactl - - # bug 810841 - addpredict /dev/kfd - - local mylang - local myopt - - use cxx && mylang="cxx" || mylang="c" - use debug && myopt="debug" || myopt="opt" - - # environmental variables expected by petsc during build - - export PETSC_DIR="${S}" - export PETSC_ARCH="linux-gnu-${mylang}-${myopt}" - - if use debug; then - strip-flags - filter-flags -O* - fi - - # C Support on CXX builds is enabled if possible i.e. when not using - # complex scalars (no complex type for both available at the same time) - - econf \ - scrollOutput=1 \ - FFLAGS="${FFLAGS} -fPIC" \ - CFLAGS="${CFLAGS} -fPIC" \ - CXXFLAGS="${CXXFLAGS} -fPIC" \ - LDFLAGS="${LDFLAGS}" \ - --prefix="${EPREFIX}/usr/$(get_libdir)/petsc" \ - --with-shared-libraries \ - --with-single-library \ - --with-clanguage=${mylang} \ - $(use cxx && ! use complex-scalars && echo "with-c-support=1") \ - --with-petsc-arch=${PETSC_ARCH} \ - --with-precision=double \ - --with-gnu-compilers \ - --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs blas lapack)" \ - $(petsc_enable debug debugging) \ - $(petsc_enable mpi) \ - $(petsc_select mpi cc mpicc $(tc-getCC)) \ - $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \ - $(petsc_enable fortran) \ - $(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \ - $(petsc_enable mpi mpi-compilers) \ - $(petsc_select complex-scalars scalar-type complex real) \ - --with-windows-graphics=0 \ - --with-matlab=0 \ - --with-cmake:BOOL=1 \ - $(petsc_enable threads pthread) \ - $(petsc_with afterimage afterimage \ - /usr/include/libAfterImage -lAfterImage) \ - $(use_with hdf5) \ - $(petsc_with hypre hypre \ - /usr/include/hypre -lHYPRE) \ - $(use_with sparse suitesparse) \ - $(petsc_with superlu superlu \ - /usr/include/superlu -lsuperlu) \ - $(use_with X x) \ - $(use_with X x11) \ - $(petsc_with scotch ptscotch \ - /usr/include/scotch \ - [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \ - $(petsc_with mumps scalapack \ - /usr/include/scalapack -lscalapack) \ - $(petsc_with mumps mumps \ - /usr/include \ - [-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \ - --with-imagemagick=0 \ - --with-python=0 \ - $(use_with boost) \ - $(use_with fftw) -} - -src_install() { - emake DESTDIR="${ED}" install - - # add PETSC_DIR to environmental variables - cat >> 99petsc <<- EOF - PETSC_DIR=${EPREFIX}/usr/$(get_libdir)/petsc - LDPATH=${EPREFIX}/usr/$(get_libdir)/petsc/lib - EOF - doenvd 99petsc -} diff --git a/sci-mathematics/petsc/petsc-3.17.1-r2.ebuild b/sci-mathematics/petsc/petsc-3.17.1-r2.ebuild deleted file mode 100644 index df212d111e62..000000000000 --- a/sci-mathematics/petsc/petsc-3.17.1-r2.ebuild +++ /dev/null @@ -1,190 +0,0 @@ -# Copyright 1999-2024 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -PYTHON_COMPAT=( python3_10 pypy3 ) - -inherit flag-o-matic fortran-2 python-any-r1 toolchain-funcs - -DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation" -HOMEPAGE="https://www.mcs.anl.gov/petsc"; -SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${P}.tar.gz"; - -LICENSE="BSD-2" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="afterimage boost complex-scalars debug fftw -fortran hdf5 hypre int64 mpi metis mumps scotch superlu threads X" - -# readd sparse when suitesparse-5.6.0 is in tree -# sparse? ( >=sci-libs/suitesparse-5.6.0 >=sci-libs/cholmod-1.7.0 ) -# $(use_with sparse suitesparse) \ -RDEPEND=" - virtual/blas - virtual/lapack - - afterimage? ( media-libs/libafterimage ) - boost? ( dev-libs/boost ) - fftw? ( sci-libs/fftw:3.0[mpi?] ) - hdf5? ( sci-libs/hdf5:=[mpi?] ) - hypre? ( >=sci-libs/hypre-2.18.0[int64?,mpi?] ) - metis? ( >=sci-libs/parmetis-4 ) - mpi? ( virtual/mpi[fortran?] ) - mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack ) - scotch? ( sci-libs/scotch[int64?,mpi?] ) - superlu? ( >=sci-libs/superlu-5 ) - X? ( x11-libs/libX11 ) -" -DEPEND=" - ${RDEPEND} - ${PYTHON_DEPS} -" -BDEPEND=" - dev-build/cmake - sys-apps/which - virtual/pkgconfig -" - -# hypre and superlu curretly exclude each other due to missing linking to hypre -# if both are enabled -REQUIRED_USE=" - afterimage? ( X ) - complex-scalars? ( !hypre !superlu ) - hdf5? ( mpi ) - hypre? ( mpi !superlu ) - mumps? ( mpi scotch ) - scotch? ( mpi ) - superlu? ( !hypre ) -" -PATCHES=( - "${FILESDIR}/${PN}-3.7.0-disable-rpath.patch" - "${FILESDIR}"/${PN}-3.16.0-fix_sandbox_violation.patch -) - -# petsc uses --with-blah=1 and --with-blah=0 to en/disable options -petsc_enable() { - use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0" -} -# add external library: -# petsc_with use_flag libname libdir -# petsc_with use_flag libname include linking_libs -petsc_with() { - local myuse p=${2:-${1}} - if use ${1}; then - myuse="--with-${p}=1" - if [[ $# -ge 4 ]]; then - myuse="${myuse} --with-${p}-include=${EPREFIX}${3}" - shift 3 - myuse="${myuse} --with-${p}-lib=$@" - else - myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}" - fi - else - myuse="--with-${p}=0" - fi - echo ${myuse} -} - -# select between configure options depending on use flag -petsc_select() { - use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4" -} - -src_configure() { - # bug 548498 - # PETSc runs mpi processes during configure that result in a sandbox - # violation by trying to open /proc/mtrr rw. This is not easy to - # mitigate because it happens in libpciaccess.so called by libhwloc.so, - # which is used by libmpi.so. - addpredict /proc/mtrr - # if mpi is built with knem support it needs /dev/knem too - addpredict /dev/knem - - # configureMPITypes with openmpi-2* insists on accessing the scaling - # governor rw. - addpredict /sys/devices/system/cpu/ - - # bug 771711 - # configureMPIEXEC and configureMPITypes access /dev/nvidiactl - addpredict /dev/nvidiactl - - # bug 810841 - addpredict /dev/kfd - - local myopt - - use debug && myopt="debug" || myopt="opt" - - # environmental variables expected by petsc during build - - export PETSC_DIR="${S}" - export PETSC_ARCH="linux-gnu-c-${myopt}" - - if use debug; then - strip-flags - filter-flags -O* - fi - - tc-export AR RANLIB - - # C Support on CXX builds is enabled if possible i.e. when not using - # complex scalars (no complex type for both available at the same time) - - econf \ - scrollOutput=1 \ - AR="${AR}" \ - CFLAGS="${CFLAGS} -fPIC" \ - CPPFLAGS="${CPPFLAGS}" \ - CXXFLAGS="${CXXFLAGS} -fPIC" \ - CXXOPTFLAGS="${CXXFLAGS} -fPIC" \ - FCFLAGS="${FCFLAGS} -fPIC" \ - FFLAGS="${FFLAGS} -fPIC" \ - LDFLAGS="${LDFLAGS}" \ - MAKEFLAGS="${MAKEFLAGS}" \ - RANLIB="${RANLIB}" \ - --prefix="${EPREFIX}/usr/$(get_libdir)/petsc" \ - --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs blas lapack)" \ - --with-cmake:BOOL=1 \ - --with-gnu-compilers \ - --with-imagemagick=0 \ - --with-matlab=0 \ - --with-petsc-arch="${PETSC_ARCH}" \ - --with-precision=double \ - --with-python=0 \ - --with-shared-libraries \ - --with-single-library \ - --with-windows-graphics=0 \ - $(petsc_enable debug debugging) \ - $(petsc_enable fortran) \ - $(petsc_enable mpi) \ - $(petsc_enable mpi mpi-compilers) \ - $(petsc_enable threads pthread) \ - $(petsc_select complex-scalars scalar-type complex real) \ - $(petsc_select mpi cc mpicc $(tc-getCC)) \ - $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \ - $(petsc_with afterimage afterimage /usr/include/libAfterImage -lAfterImage) \ - $(petsc_with hypre hypre /usr/include/hypre -lHYPRE) \ - $(petsc_with superlu superlu /usr/include/superlu -lsuperlu) \ - $(petsc_with scotch ptscotch /usr/include/scotch [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \ - $(petsc_with mumps scalapack /usr/include/scalapack -lscalapack) \ - $(petsc_with mumps mumps /usr/include [-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \ - $(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \ - $(use int64 && echo "--with-index-size=64") \ - $(use_with boost) \ - $(use_with fftw) \ - $(use_with hdf5) \ - $(use_with X x) \ - $(use_with X x11) -} - -src_install() { - emake DESTDIR="${ED}" install - - # add PETSC_DIR to environmental variables - cat >> 99petsc <<- EOF - PETSC_DIR=${EPREFIX}/usr/$(get_libdir)/petsc - LDPATH=${EPREFIX}/usr/$(get_libdir)/petsc/lib - EOF - doenvd 99petsc -}
