> Is this because I manually changed BOOT_CFLAGS as passed to make?

As previously said, you ought to avoid fiddling with BOOT_CFLAGS in any case.  
Configure --with-build-config=bootstrap-lto --with-fpmath=sse --with-arch=xxx 
and so on, and just type "make".

> And why it took so long?

Probably because you're also fiddling with configure checking options.  Avoid 
doing that if you aren't familiar with them.

-- 
Eric Botcazou

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