Very nice. I had never seen the Oono article! I'm only barely familiar with 
Kappa, though more aware of the rule-based systems in general. It's great that 
you invoked them, here, because I haven't been thinking about them in the 
context of multi-paradigm modeling of human reasoning. When I asked the (1) 
question, I was thinking of progressive freezing as presented in your (and M's) 
book, contextual change over time more than gen-phen evolution. But you covered 
the larger ground with the self-modifying languages.

And I appreciate the comment on reduction(ism) to a best representation. In 
particular, the problem of uniqueness is a good foil for clear thinking. I 
agree completely re: GUTs. I always argue against them, but only because I 
*want* them, preferably many of them. >8^D

I've got lots to work on, now. Thanks.


On 12/31/20 7:33 AM, David Eric Smith wrote:
> Glen, thank you, 
> 
>> 1) do you imagine the underlying generator(s) evolving over time (i.e. 
>> open-ended spaces), and
> 
> I wouldn’t want to rule out anything one could get to work.  The obvious 
> common application would be to evolutionary systems.  I tend not to like 
> overdoing the “evolution is special because its state at any time changes the 
> rules for its dynamics”, as if somehow a science of evolution would float 
> above those plebeian physical sciences and the people who practice them.  
> Having different kinds of transitions available from different states is 
> generic; to me the cases that are “evolutionary” in an interesting sense tend 
> to be set apart by their dimensionality, complexity, and statefulness — what 
> Yoshi Oono calls “fundamental conditions” as distinct from “boundary 
> conditions”.  
> https://link.springer.com/chapter/10.1007/978-4-431-54029-8_5 
> <https://link.springer.com/chapter/10.1007/978-4-431-54029-8_5>
> Where possible I find it preferable to look for a set of stable laws 
> governing the space of all possible histories, and to locate state-dependence 
> as a property of solutions within a history, much as one embeds an open 
> dynamic thermal system as a transient within a larger in-principle closed 
> system.  But the evolutionists do have a good point: for systems where one 
> can’t practically compute (and doesn’t care about) all possible trajectories, 
> it would be nice to have a science that is more local to the trajectory, and 
> to have ways to handle time-dependent “laws” or “aspects of truth”.
> 
> The modern community that goes by the name of “rule-based modeling” does this 
> in a way that I like, using category-theoretic constructs of pushouts and 
> pullbacks to be explicit about how much context is needed.  I have pointed on 
> this list before to 
> https://cheminf.imada.sdu.dk/mod/ <https://cheminf.imada.sdu.dk/mod/>
> https://kappalanguage.org/ <https://kappalanguage.org/>
> and there is some really great work on more general rule-based systems by 
> Nicolas Behr, finally installed in the CNRS:
> https://scholar.google.com/scholar?q=Nicolas+Behr+rule-based+modeling&hl=en&as_sdt=0&as_vis=1&oi=scholart
>  
> <https://scholar.google.com/scholar?q=Nicolas+Behr+rule-based+modeling&hl=en&as_sdt=0&as_vis=1&oi=scholart>
> They are interested in such questions as: what can you compute from the 
> algebra of rule dependencies, without having to solve for a whole state?  Or: 
> when can you obtain information about correlation functions for limited sets 
> of properties (effectively, governed by some marginal distribution) without 
> having infinite regress of dependencies on the whole system?  Walter Fontana 
> et al. have a particular structure for such dependencies, which he calls 
> “stories”, and has developed within the context of Kappa.  
> https://academic.oup.com/bioinformatics/article/34/13/i583/5045802 
> <https://academic.oup.com/bioinformatics/article/34/13/i583/5045802>
> I don’t understand exactly what these are, and need to learn.
> 
>> 2) do you commit (even if kindasorta) to the idea that the *structure* of 
>> the states of knowledge map well to the structure of the generator(s) (i.e. 
>> something like R. Rosen's "natural law”)?
> 
> Yes, I think this is necessary in order to be saying anything at all.  The 
> question of how two very different formal systems can have “the same 
> structure” or “the same information” seems hard and interesting.  With what 
> further assumptions can I say that a small collection of unconditioned and 
> conditional stationary distributions, and perhaps a few dynamical 
> correlations functions, contain all the same information as is contained in 
> an underlying generating process, and are effectively just one of the 
> available representations of it.  This would seem to be at the foundation of 
> what reductionism in science can be.  It is also about the theory of 
> representations, of which I don’t know very much.  I seem to remember JonZ's 
> having some comments on this subject in the last go-round.  Category theory 
> appears to be the universal language these days for rule-based modeling.
> 
> The ML implication here is of course obvious (I know, to all): can we learn 
> useful things about the difference between an abstract structure and its 
> representations by studying cases?  Implicit representations, 
> self-presentation by a learner, and things we have discussed here before.
> 
>> It seems like we must say yes to (2), even if we hedge a bit. (1) is 
>> relevant to the *rates* of any convergence. If the answer is "yes, but the 
>> rate of convergence is faster than the evolution of the generator", then we 
>> can safely answer "no, for practical purposes”. 
> 
> Totally agree.
> 
>> If the answer is "no", then it amounts to some metaphysical commitment to 
>> convexity. And (2) is relevant to my problem with using any singular logic 
>> to model reasoning (inferential vs. physical entailment). Together, an 
>> answer of "no" to (1) and "yes" to (2) seems to imply a commitment to a GUT. 
>> But that's really a tangent.
> 
> Also, yes.  It’s interesting, GUTs have a bad name, I guess for a variety of 
> reasons, whether boasting, false claims, cutting off useful questions just 
> because they aren’t final, etc., all of which seem to me to be about human 
> bad behavior and not about what is needed by an idea.  It could be that 
> associating “truth” with unification is appropriate, and need not be harmful 
> to practice if one understands that states of knowledge don’t claim to be 
> truth, but at best isomorphic to it in patches if we get lucky.  

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