Use something like --maskthresh 0.5
where it will threshold the mask to exclude every voxel whose abs is less than 0.5.
so you choose your threshhold


On 5/14/2025 6:37 PM, Gonzalo Rojas Costa wrote:

        External Email - Use Caution

Hi:

  Using "--masksign abs" option: which must be the syntax for "--maskthresh" option in mri_segstats command?

  Sincerely,


Gonzalo M. Rojas-Costa
Adjunct Assistant Professor
School of Medicine
Finis Terrae University
Santiago
Chile

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is 
addressed.  If you believe this e-mail was sent to you in error and the e-mail 
contains patient information, please contact the Mass General Brigham 
Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline 
<https://www.massgeneralbrigham.org/complianceline> .
Please note that this e-mail is not secure (encrypted).  If you do not wish to 
continue communication over unencrypted e-mail, please notify the sender of 
this message immediately.  Continuing to send or respond to e-mail after 
receiving this message means you understand and accept this risk and wish to 
continue to communicate over unencrypted e-mail. 

Reply via email to