External Email - Use Caution
Have you tried running freeview from the command line after setting up the environment? - R. $ export FREESURFER_HOME=/Applications/freesurfer/8.0.0-beta $ source $FREESURFER_HOME/SetUpFreeSurfer.sh .... then try running freeview without any arguments to check it opens an empty window ... $ freeview On 2/7/25 14:24, Sahil Bajaj (sahil.br...@gmail.com) wrote: External Email - Use Caution Greetings, I am trying to use the latest FreeSurfer version 8.0 (beta version) on my Mac Book Pro. But somehow I am struggling to resolve the following issue when I try to open FreeView. When I checked the FreeSurfer directory - I can see that /Applications/freesurfer/bin/freeview exists but /Applications/freesurfer/Freeview.app/Contents/MacOS/freeview: does not exist.. Any help would be greatly appreciated. Best, Sahil sbajaj@XJ6RDJF6Y9 ~ % export FREESURFER_HOME=/Applications/freesurfer source $FREESURFER_HOME/SetUpFreeSurfer.sh -------- freesurfer-macOS-darwin_arm64-8.0.0-beta-20241103-b8aacdc -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /Applications/freesurfer FSFAST_HOME /Applications/freesurfer/fsfast FSF_OUTPUT_FORMAT nii.gz SUBJECTS_DIR /Applications/freesurfer/subjects MNI_DIR /Applications/freesurfer/mni FSL_DIR /Users/sbajaj/fsl sbajaj@XJ6RDJF6Y9 ~ % freeview & [1] 15056 /Applications/freesurfer/bin/freeview: line 2: /Applications/freesurfer/Freeview.app/Contents/MacOS/freeview: No such file or directory _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1gXDVdC-uo76VCgZjMTGoXYmkO-vhDL2daaqcrdfrGJESPdTwY1AIvSCUU-b6t2hDRVRnI-pWpaIOTvOAP6g3fKa4pHyimbwFcM9--kjzyZDMotLYCYijZEjSZAAFNK_Xj5N2mIcgFrDJvewCKNKfNe4W627ZbwT8nryFVchm1X0JlvihfhDRZk4cqQdoNLaH_UtsuMcSAnDpmU2Z1Av0A13w4KcYKL7haqtQjfHo1bdcQxZyVJg8cB7EaxL6_GQcOIKsXR7owLoiiVkrK87nkDfdtiWfUu3dibyCLeHRWX8UyuQgy43q7KIKyGAJMRYcfxuKDZq-UylrXRlNmiTTug/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://secure-web.cisco.com/1nBhwOq4-b4wTkpXe5R_C3IR8MS_FVpkNPu8mQY4GCKGY6qBjXe5npcs0fhF8kuj8PS3G4rAA9P6fcUcJnQZpkUzzzT7K9NLhLeGfBRfmkD02NXX_XDAZyaLV7ohl_p4hvgS3hxaQd7E0h5PtMFHggnbnOJ_HEhawCv5CMfSRafstkqNw3BA5B_XUZzUPxrfuMHRMAFLpIQB2BMfyvRaP4a0uSXoUmHBkkIYPYp4TEkcFtyAXx74M5UCZBjzm6gn59u5FraHfAAa4YTDnPxmTSX8-P8SQt5WpQLDVFYkGR5JLBL0k1bOL3skYgCpDhmVM0ehxYF6Dunn9uTa9DzMKyg/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline <https://secure-web.cisco.com/18eF4_RBcos-H0-vARQaECITiLJ_CS7wKyWW8ti2L6NxGAd7ZyIQAAZOG0EkZhfs0kRZzoDZKipoVOyMfJhoic17dGPtBlt3r5lTSxZJpjKDEQkIEus4kWKjwn-xtu9s16dsGWPv2e5TfIsKOT69YGjDdwTJwqM1gnvyut_DK3zaeQiUXy3bV9YqoGQVlswlkDJj_Ny5fcZdugS5CrIvKxPqcpvSNnB4jDo1S2WwyUnKmO3t_P5d2IxUX5w9U59ggx68Q7-4KALpRVltEoaY2obZvihyu4gzIH1MeplTr7ORXy4wXgnE0kJyebJbRQ-Hplc0cTdKSBjdMGt-Ms9OnPw/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline%26gt; . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline <https://www.massgeneralbrigham.org/complianceline> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
