External Email - Use Caution Hi Freesurfer users/experts,
I was trying to run NextBrain (cloned from here: https://secure-web.cisco.com/1UpUf_-L1H1hsaTNLobhBBGoHrKNtCqL7zDwyidsUOHZH8smH10XJiBnxtCbpKN33hNCybEMSSKYo-nCdaX6WUDTdixv-K0w3Hay60KZ6qyp76TSe7MS0J16_cbYJ-lfOTsW9UYMnB7vFGkCxBebkx56VhM5k4vbsliMR5r83Wof0CFH5S--kF7SRX2h8CkWCrvXt17MsRjq3OIpspflrbBHvq7nQzcsII90ifhrfeDF6g9UM6PZ8KyaqnVGQ3hQW6YTpXyzSWsJbPGgq1-BODXIkRcTcANTq2CFaqHGvalOQRiWgZON3c9t4JfWFOFFEstPGKImnj6gcui1mIbbLEQ/https%3A%2F%2Fgithub.com%2Ffreesurfer%2Ffreesurfer%2Ftree%2Fdev%2Fmri_histo_util), and asked HPC admin to install atlas_full and atlas_simplified in the designated folders, but encountered this error that segment_fast.py is not available in FS_HOME/python/packages/ERC_bayesian_segmentation/scripts/segment_fast.py (or segment_fireants.py). The code I run (in the folder of the downloaded tool): ./mri_histo_atlas_segment_fireants /path/to/input/T1.nii.gz /path/to/output/folder 0 dct I'm using FreeSurfer 7.4.1. Any help would be appreciated. Best, Amir
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