External Email - Use Caution Dear Freesurfer experts,
is there a recent recommendation on how to get the thalamic nuclei segmentation into MNI space? I have tried the AAL3 atlas recommended in this previous mail (https://secure-web.cisco.com/1H8Dmv_kif-oWVc1HwepCKJBjRkpbig-MqiMJUrqPMzzu8xkoQDLTOelzb5LPLsVNs7vay3fJYN5oD8pT-YhFkoLd1lrlJzxcFvdxPwwgG_uwqaz8T_hMp5rLXYkvvLYcDLrLFdiiQGyu4gkdfdLmzR7Y5dV6QSJYMr8v65hL0bQm2MWbHIY2li-A-AD_drjKXfH4LLijMflbcU9e1xm4j41l9UvRtQ0Nei8v2KPMmGzXdJZGCNdR2jbkDUzQVbSTd1FVeQ_3vyhg5mg91ma9Gbb1bcEnfjI71g6IAnthCifMoI4qN_RS2gEZVbYOafaBAK8-8Q0z4-_k_k0H9SEjWQ/https%3A%2F%2Fwww.mail-archive.com%2Ffreesurfer%40nmr.mgh.harvard.edu%2Fmsg66907.html) but it contains only 15 instead of 26 nuclei per hemisphere. I have run recon-all and the ThalamicNuclei pipeline on the MNI-152 subject, which looks decent but wanted to make sure there is no better way? Thank you! Best, Melissa Thalhammer
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