External Email - Use Caution
Hello,
I am not sure if there is a right or wrong here; personally, I'd do a single
whole-brain analysis, and apply ROIs only as the very last step, correcting for
multiple comparisons within each ROI and for the number of ROIs. I would not
expect fundamental differences between this approach and your approach, though.
FDR2 may be more sensitive than FDR, but not necessarily in all circumstances.
Hope this helps,
Kersten
External Email - Use Caution
Hello FreeSurfer experts,
I am using a mass-univariate pipeline to assess cortical thickness changes
longitudinally at a regional level (based on the D-K atlas), and have been
following this thread: MailScanner has detected a possible fraud attempt from
"secure-web.cisco.com" claiming to
behttps://http://secure-web.cisco.com/1OH1IdmTmp1zegRFjxpfr0wXoZPd0LxA71jtBdbSf-JZ4MmHH8vePfgkaL122xK74KDlCjFc9Z9tKAK9zLp6g5gtUm24hfYTjx2LYmvv1aQcVzVyOSAmzkTSjG-kTU-0crhhQXNCEzkDiEALdKRiz2VcWJYiM5P6cgLzPzFFGmSDGh1ylE0zM7bQWlLkS1KuyntMeJPIhn2gD84AdHs0kzZfwcJVlkTYy8urKcuT6ixmY2ZTKvN_on4mkMamJoWQaa-rrWIG-nEHodFqWCeWdtEmNgfivxNfA06SX0ROHzwcVQBKvgYbu3pbQg7Apbncz/http%3A%2F%2Fwww.mail-archive.com%2Ffreesurfer%40nmr.mgh.harvard.edu%2Fmsg76987.html<https://secure-web.cisco.com/1gfQ9eWAEqDZ3DGmI9NL7F2WPKbHBLsM60VyuP_LVR3dT1CV3DkQLnS7V3mw52P2LBaCekNfBwRZ37ft6dOBwXhzUo_wrbKJVG2XMB6GHfBDDPgLMXLkX7heqJ_KkmWwqJy9piolbuNnl5eaQ39pcYUHcoICiPTjHmCz39Kf6z2NQq9upBO5S0R7ruzTcfdlTWq2KiXcwnU5TGmYC3srVmnpf9O6iRWBD-KwL6sYWR9N7oVhfzBX4MGtQvWaZLqWHR1O2oClgbUhcdWbD_-CG15C0wAv3HIAwKDxQQ4Xz1z8IN_wUzZ3LBykDu0uR2LrPr465UModBjZSGhvR14zGWw/https%3A%2F%2Fwww.mail-archive.com%2Ffreesurfer%40nmr.mgh.harvard.edu%2Fmsg76987.html>.
My pipeline is set up so that lme_mass_fit, lme_mass_F, and lme_mass_FDR are
all run independently in a for-loop for each individual ROI, rather than
altogether. Is this correct? As well, would using FDR2 be more advantageous
than FDR?
Best,
Daniel Bondi
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Mass General Brigham
Compliance HelpLine at
https://secure-web.cisco.com/1v1L_BCMivW3bCQUU9Uu8NHjxSCKVstRZIv84UcEfiz1t-WVPGnanR808Kbr56z4NIuvXZ44eXkj_gRrR_UtpqKHneGWC-dwebiXsySLz7l5f9-UOVQpj8Nd8LUadIULY2A5WkuNYJfZZxLVu8kEoNAg7gTHDw39hWAAdkJNJ09zYTYeyxV1Q7GwclIAlfj2OU8d-J9VVFxdpdKqLfHHJar8PCPHYZ3YpbeAT91QikJ1GFhXM7_YeQPvipYigYCoiP49tAdzaFtIEXwY5R3Y8LPrqVPW9fc_KU9-JBCg5vLs0sSQ8lIGnfjR2_dop2trj/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline
.
Please note that this e-mail is not secure (encrypted). If you do not wish to
continue communication over unencrypted e-mail, please notify the sender of
this message immediately. Continuing to send or respond to e-mail after
receiving this message means you understand and accept this risk and wish to
continue to communicate over unencrypted e-mail.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Mass General Brigham
Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline
<https://www.massgeneralbrigham.org/complianceline> .
Please note that this e-mail is not secure (encrypted). If you do not wish to
continue communication over unencrypted e-mail, please notify the sender of
this message immediately. Continuing to send or respond to e-mail after
receiving this message means you understand and accept this risk and wish to
continue to communicate over unencrypted e-mail.
