You can run something like
mri_convert nopvc.nii.gz --ascii nopvc.dat
This will give you a text file
To put a bunch together across subject, you can run something like
mri_concat */nopvc.nii.gz --o all.nopvc.nii.gz
Then do the same trick as above.
On 8/20/2024 12:01 AM, WONG Wan Wa wrote:
External Email - Use Caution
Any idea?
*Angel Wong, PhD*
Scientific Officer
Hong Kong Center for Neurodegenerative Diseases (HKCeND)
------------------------------------------------------------------------
*From:* freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of WONG Wan Wa
<angelw...@ust.hk>
*Sent:* Thursday, August 15, 2024 12:13 PM
*To:* freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
*Subject:* [Freesurfer] PetSurfer: how to convert nopvc.nii.gz to a
format like gtm.stats.dat?
External Email - Use Caution
Hi experts,
As stated in the subject, how to convert "nopvc.nii.gz" generated by
"mri_gtmpvc" to a format like "gtm.stats.dat"? Moreover, how to
consolidate all "gtm.stats.dat"'s PVC uptake values of ROIs from
different subjects in one spreadsheet? Is there any existing command
to do that?
Thanks,
Angel
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