You can create your own color table file and put it in ‘luts’ folder under your FS home directory. There are a few stock color table files in that folder. You can copy and modify one of them to your own. The current color table does not support transparency, though.
Ruopeng On Jul 8, 2024, at 7:12 PM, Proulx, Jean Sebastien <jspro...@mgh.harvard.edu<mailto:jspro...@mgh.harvard.edu>> wrote: Hello, This seems to be a longstanding issue, unless there is a post I miss. How can one specify a custom colormap for a volume? Bonus point for how to specify an alpha channel for voxel-specific transparency. My immediate goal: visualize angle data with a colorbar that wraps around a full circle (same color for values 0 and 2pi). That would be enough for now, but ultimately I want these angles to display with high transparency for voxels where the estimate is uncertain (low 2-d vector magnitude). Thanks for the help and Have a great day! Sebastien _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline <https://www.massgeneralbrigham.org/complianceline> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
