External Email - Use Caution Dear -R Thankyou for your response. (base) [XXXX-XXXX-XXXX ~]$ cd /tmp (base) [XXXX-XXXX-XXXX tmp]$ df -h . Filesystem Size Used Avail Use% Mounted on */dev/mapper/rhel-root 50G 43G 7.4G 86% /*
As per your suggestion we have deleted multiple files in /tmp please find below the output of tmp]$ sudo du -a [sudo] password for XXXX-XXXX: 0 ./.ICE-unix/20982 0 ./.ICE-unix/29568 0 ./.ICE-unix/19226 0 ./.ICE-unix/19713 0 ./.ICE-unix/19234 0 ./.ICE-unix/19967 0 ./.ICE-unix 0 ./.Test-unix 0 ./.font-unix 0 ./.X11-unix/X0 0 ./.X11-unix 0 ./.XIM-unix 0 ./systemd-private-8275746e5d6b4542bb83f3b97150b781-colord.service-ssvzdw/tmp 0 ./systemd-private-8275746e5d6b4542bb83f3b97150b781-colord.service-ssvzdw 4 ./yum_save_tx.2024-07-04.11-59.6QHKSE.yumtx 0 ./systemd-private-383d8beca3f9487c87e4427e19fd7256-colord.service-HtLZ8s/tmp 0 ./systemd-private-383d8beca3f9487c87e4427e19fd7256-colord.service-HtLZ8s 0 ./systemd-private-383d8beca3f9487c87e4427e19fd7256-rtkit-daemon.service-W9zxj8/tmp 0 ./systemd-private-383d8beca3f9487c87e4427e19fd7256-rtkit-daemon.service-W9zxj8 0 ./systemd-private-8275746e5d6b4542bb83f3b97150b781-chronyd.service-Rm3N8t/tmp 0 ./systemd-private-8275746e5d6b4542bb83f3b97150b781-chronyd.service-Rm3N8t 0 ./.esd-1003/socket 0 ./.esd-1003 4 ./.X0-lock 0 ./systemd-private-8275746e5d6b4542bb83f3b97150b781-bolt.service-CGDUJW/tmp 0 ./systemd-private-8275746e5d6b4542bb83f3b97150b781-bolt.service-CGDUJW 4 ./yum_save_tx.2024-07-04.11-21.7y6gFH.yumtx 0 ./systemd-private-8275746e5d6b4542bb83f3b97150b781-fprintd.service-EozS2b/tmp 0 ./systemd-private-8275746e5d6b4542bb83f3b97150b781-fprintd.service-EozS2b 0 ./hsperfdata_MBIAL 0 ./systemd-private-8275746e5d6b4542bb83f3b97150b781-fwupd.service-xsxdcF/tmp 0 ./systemd-private-8275746e5d6b4542bb83f3b97150b781-fwupd.service-xsxdcF 4 ./yum_save_tx.2024-07-04.06-17.SHMEhK.yumtx 0 ./systemd-private-8275746e5d6b4542bb83f3b97150b781-rtkit-daemon.service-D6jRPY/tmp 0 ./systemd-private-8275746e5d6b4542bb83f3b97150b781-rtkit-daemon.service-D6jRPY 4 ./yum_save_tx.2024-07-04.11-38.mlSqY5.yumtx 0 ./systemd-private-383d8beca3f9487c87e4427e19fd7256-chronyd.service-2TAXFe/tmp 0 ./systemd-private-383d8beca3f9487c87e4427e19fd7256-chronyd.service-2TAXFe 0 ./systemd-private-383d8beca3f9487c87e4427e19fd7256-bolt.service-PPXDHj/tmp 0 ./systemd-private-383d8beca3f9487c87e4427e19fd7256-bolt.service-PPXDHj 0 ./systemd-private-383d8beca3f9487c87e4427e19fd7256-fwupd.service-Rnn6To/tmp 0 ./systemd-private-383d8beca3f9487c87e4427e19fd7256-fwupd.service-Rnn6To 32 . We have deleted MCRv97 from $FREESURFER_HOME/freesurfer and again tried installing using fs_install_mcr R2019b. the same error appeared again as shown below: (Jul 09, 2024 17:57:14) The following error was detected while installing 3p/mpich2_glnxa64: /tmp/tmp.jTM7f403r0/install-target/v97/bin/glnxa64/smpd (No space left on device) Would you like to retry installing 3p/mpich2_glnxa64? If you press No, the installer will exit without completing the installation. More information can be found at /tmp/mathworks_XXXX.log (Jul 09, 2024 17:57:14) Exiting with status -1 (Jul 09, 2024 17:57:14) End - Unsuccessful. Finished R2019b installed successfully in /home/MBIAL/freesurfer/MCRv97 mathworks_XXXX.log is attached for your review Kindly advice on how to proceed with MCR installation. Thanking you in advance On Tue, Jul 9, 2024 at 3:45 PM fsbuild <fsbu...@contbay.com> wrote: > > It looks like /tmp is running out of space (which can be a separate > partition much smaller than the boot partition) to the point where the > matlab installer cannot use it. You can check that with, > > $ cd /tmp > $ df -h . > > You should be able to delete anything under /tmp as nothing permanent > should be written there. > > - R. > > On Jul 9, 2024, at 04:02, Himanshu Joshi <anshuhi...@gmail.com> wrote: > > External Email - Use Caution > > Dear list, > I am trying to install matlab runtime environment (MCR) in > $FREESURFER_HOME/freesurfer by using *fs_install_mcr R2019b*. the error > is mentioned below: > (Jul 09, 2024 12:00:11) The following error was detected while installing > > > *3p/mpich2_glnxa64:/tmp/tmp.YZJEtKG8O6/install-target/v97/bin/glnxa64/smpd > (No space left on device)* > Would you like to retry installing 3p/mpich2_glnxa64? If you press No, > the installer will exit without completing the installation. More > information can be found at /tmp/mathworks_MBIAL.log > (Jul 09, 2024 12:00:11) Exiting with status -1 > (Jul 09, 2024 12:00:11) End - Unsuccessful. > Finished > R2019b installed successfully in /home/MBIAL/freesurfer/MCRv97 > > We have enough space on / filesystem: > Filesystem Size Used Avail Use% Mounted on > /dev/mapper/rhel-root 50G 43G 7.4G 86% / > devtmpfs 252G 0 252G 0% /dev > tmpfs 252G 21M 252G 1% /dev/shm > tmpfs 252G 19M 252G 1% /run > tmpfs 252G 0 252G 0% /sys/fs/cgroup > /dev/sda2 497M 219M 279M 44% /boot > /dev/mapper/rhel-home 3..3T 2.3T 961G 71% /home > tmpfs 51G 48K 51G 1% /run/user/1003 > > > Kindly suggest the needful > > Thanks and Regards > -- > Dr Himanshu Joshi > > _______________________________________________ > Freesurfer mailing list > freesur...@nmr.mgh..harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- -HJ
(Jul 09, 2024 18:46:53) ################################################################## (Jul 09, 2024 18:46:53) # (Jul 09, 2024 18:46:53) # Today's Date: (Jul 09, 2024 18:46:53) Tue Jul 09 18:46:53 IST 2024 (Jul 09, 2024 18:46:53) (Jul 09, 2024 18:46:53) System Info (Jul 09, 2024 18:46:53) OS: Linux 3.10.0-957.21.2.el7.x86_64 (Jul 09, 2024 18:46:53) Arch: amd64 (Jul 09, 2024 18:46:53) Data Model: 64 (Jul 09, 2024 18:46:53) Language: en (Jul 09, 2024 18:46:53) Java Vendor: Oracle Corporation (Jul 09, 2024 18:46:53) Java Home: /tmp/tmp.BMySMUnlj7/sys/java/jre/glnxa64/jre (Jul 09, 2024 18:46:53) Java Version: 1.8.0_202 (Jul 09, 2024 18:46:53) Java VM Name: Java HotSpot(TM) 64-Bit Server VM (Jul 09, 2024 18:46:53) Java Class Path: /tmp/tmp.BMySMUnlj7/java/config/installagent/pathlist.jar (Jul 09, 2024 18:46:53) User Name: MBIAL (Jul 09, 2024 18:46:53) Current Directory: /tmp/tmp.BMySMUnlj7 (Jul 09, 2024 18:46:53) Input arguments: (Jul 09, 2024 18:46:53) root /tmp/tmp.BMySMUnlj7 (Jul 09, 2024 18:46:53) libdir /tmp/tmp.BMySMUnlj7 (Jul 09, 2024 18:46:53) mode silent (Jul 09, 2024 18:46:53) agreeToLicense yes (Jul 09, 2024 18:46:53) destinationFolder /tmp/tmp.BMySMUnlj7/install-target (Jul 09, 2024 18:46:53) standalone true (Jul 09, 2024 18:46:53) connectionMode OFFLINE_ONLY (Jul 09, 2024 18:46:54) Starting local product/component search in download directory (Jul 09, 2024 18:46:54) Searching for archives... (Jul 09, 2024 18:46:54) Reading /tmp/tmp.BMySMUnlj7/archives (Jul 09, 2024 18:46:54) Assembling product list... (Jul 09, 2024 18:46:54) 2952 files found in /tmp/tmp.BMySMUnlj7/archives (Jul 09, 2024 18:46:54) Reading /tmp/tmp.BMySMUnlj7 (Jul 09, 2024 18:46:54) 10 files found in /tmp/tmp.BMySMUnlj7 (Jul 09, 2024 18:46:54) Archive search complete. 2962 total files found. (Jul 09, 2024 18:46:58) Completed local product/component search (Jul 09, 2024 18:46:58) Starting local product/component search in download directory (Jul 09, 2024 18:46:58) Searching for archives... (Jul 09, 2024 18:46:58) /tmp/tmp.BMySMUnlj7/install-target/v97/archives doesn't exist ... skipping. (Jul 09, 2024 18:46:58) Archive search complete. 0 total files found. (Jul 09, 2024 18:46:58) Completed local product/component search (Jul 09, 2024 18:46:58) You might not have enough space in the specified location. Would you like to continue anyway? To continue, click Yes. To go back and choose a different folder, click No. (Jul 09, 2024 18:46:58) Download thread pool size = 4 (Jul 09, 2024 18:47:04) Installing Product: MATLAB Runtime - 5G Toolbox Addin (Jul 09, 2024 18:47:04) Installing Product: MATLAB Runtime - Aerospace Toolbox Addin (Jul 09, 2024 18:47:04) Installing Product: MATLAB Runtime - Audio Toolbox Addin (Jul 09, 2024 18:47:06) Installing Product: MATLAB Runtime - Automated Driving Toolbox Addin (Jul 09, 2024 18:47:06) Installing Product: MATLAB Runtime - Bioinformatics Toolbox Addin (Jul 09, 2024 18:47:20) Installing Product: MATLAB Runtime - Communications Toolbox Addin (Jul 09, 2024 18:47:21) Installing Product: MATLAB Runtime - Computer Vision Toolbox Addin (Jul 09, 2024 18:47:30) Installing Product: MATLAB Runtime - Control System Toolbox Addin (Jul 09, 2024 18:47:31) Installing Product: MATLAB Runtime - Core (Jul 09, 2024 18:47:38) java.io.FileNotFoundException: /tmp/tmp.BMySMUnlj7/install-target/v97/bin/glnxa64/smpd (No space left on device) at java.io.FileOutputStream.open0(Native Method) at java.io.FileOutputStream.open(FileOutputStream.java:270) at java.io.FileOutputStream.(FileOutputStream.java:213) at com.mathworks.instutil.FileIO.copyToFileFromStream(FileIO.java:509) at com.mathworks.instutil.FileIO.createFileFromStream(FileIO.java:168) at com.mathworks.instutil.FileIO.createFileFromStream(FileIO.java:159) at com.mathworks.install_impl.archive.zip.commonscompress.ArchiveEntryExtractorImpl.extract(Unknown Source) at com.mathworks.install_impl.archive.zip.commonscompress.CopyInputStreamToTempZipFileExtractor.extractEntry(Unknown Source) at com.mathworks.install_impl.archive.zip.commonscompress.CopyInputStreamToTempZipFileExtractor.extract(Unknown Source) at com.mathworks.install_impl.archive.DecodeArchiveInputStreamExtractor.extract(Unknown Source) at com.mathworks.install_impl.input.ArchiveComponentSource.extract(Unknown Source) at com.mathworks.install_impl.InstallableComponentImpl.install(Unknown Source) at com.mathworks.install_impl.ComponentInstallerImpl.installComponent(Unknown Source) at com.mathworks.install_impl.ComponentInstallerImpl.extractComponents(Unknown Source) at com.mathworks.install_impl.ComponentInstallerImpl.installComponents(Unknown Source) at com.mathworks.install_impl.ProductInstallerImpl.installComponents(Unknown Source) at com.mathworks.install_impl.ProductInstallerImpl.installProduct(Unknown Source) at com.mathworks.install_impl.ProductInstallerImpl.installProducts(Unknown Source) at com.mathworks.install_impl.InstallerImpl.install(Unknown Source) at com.mathworks.installwizard.model.InstallTask.execute(InstallTask.java:46) at com.mathworks.installwizard.model.AbstractBackgroundTask.execute(AbstractBackgroundTask.java:38) at com.mathworks.install_task.AbstractInstallTask.call(AbstractInstallTask.java:50) at com.mathworks.install_task.AbstractInstallTask.call(AbstractInstallTask.java:18) at com.mathworks.wizard.worker.WorkerImpl.doInBackground(WorkerImpl.java:24) at javax.swing.SwingWorker$1.call(SwingWorker.java:295) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at javax.swing.SwingWorker.run(SwingWorker.java:334) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748) (Jul 09, 2024 18:47:38) The following error was detected while installing 3p/mpich2_glnxa64: /tmp/tmp.BMySMUnlj7/install-target/v97/bin/glnxa64/smpd (No space left on device) Would you like to retry installing 3p/mpich2_glnxa64? If you press No, the installer will exit without completing the installation. More information can be found at /tmp/mathworks_MBIAL.log (Jul 09, 2024 18:47:38) Exiting with status -1 (Jul 09, 2024 18:47:38) End - Unsuccessful.
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