Hi Andrea, Thanks for finding this and the fix. I created a pull request that fixes this in our dev version.
Best, Martin On 20. Mar 2024, at 03:17, Boscutti, Andrea <andrea.boscu...@uth.tmc.edu> wrote: Hello FreeSurfer Developers, When attempting to run "recon-all -long" in subjects with multiple T1 inputs, I get the following error when "longmc" is run: concatLtas: Undefined variable. if: Expression Syntax. Command exited with non-zero status 1 For the entire log, see attached "longmc_error.log". The following change at line 188 of "freesurfer/bin/longmc" fixes it (case-sensitive issue in "$concatLtas"): set ud = `UpdateNeeded $origvol $CrossList $concatLtas --> set ud = `UpdateNeeded $origvol $CrossList $ConcatLtas` Best, Andrea <longmc_error.log>
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