Hi Letitia,
Can you send the full command lines that you ran and the output?
Best,
Yujing
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Schneider, Letitia Maria
Sent: Thursday, March 14, 2024 10:43 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] mri_label2vol fillribbon issue
External Email - Use Caution
Hello,
I am using Freesurfer version 7.3.2 on a mac.
I am using the mri_label2vol function to project an anatomical label into
volume space, but I realised the label comes out wrong when I use the
--fill-ribbon flag: its orientation changes to RSP.
The same label comes out right when I use the --fillthresh flag (oriented in
RPI).
Any idea why using --fillribbon changes the orientation?
Thank you in advance.
Best wishes,
Letitia
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