External Email - Use Caution Hello everyone,
I am new to freesurfer so I apologize if this is a simple answer. i'm running mris_ca_label to get the BN atlas parcellation: mris_ca_label -1 /users/bkavanau/data/bkavanau/temp/derivatives/fmriprep/sourcedata/freesurfer/sub-004/label/lh.cortex.label 001 lh /users/bkavanau/data/bkavanau/temp/derivatives/fmriprep/sourcedata/freesurfer/sub-004/surf/lh.sphere.reg /users/bkavanau/data/bkavanau/temp/derivatives/fmriprep/sourcedata/freesurfer/lh.BN_Atlas.gcs /users/bkavanau/data/bkavanau/temp/derivatives/fmriprep/sourcedata/freesurfer/sub-004/label/lh.BN_Atlas.annot But it seems freesurfer is having an issue reading my lh.cortex.label file: /users/bkavanau/data/bkavanau/temp/derivatives/fmriprep/sourcedata/freesurfer/sub-004/label/lh.cortex.label: ascii: bad interpreter: No such file or directory Might anyone have thoughts on how to resolve? I've seen adjacent errors before, but none related to ascii specifically. thank you! brian Brian Kavanaugh, PsyD, ABPP Board Certified Pediatric Neuropsychologist, E. P. Bradley Hospital Assistant Professor, Warren Alpert Medical School of Brown University
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