Yes, you can use the siemens STC option (ie, -stc siemens)
On 2/26/2024 9:02 PM, Maria Hakonen wrote:
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Dear all,
Have I understood correctly that the slice delay of each slice is not
needed when performing slice time correction with preprocess-sess?
I am processing an open OASIS fMRI dataset. The dataset has fMRI data
in nifti format and JSON files that contain information about the data.
In the instructions they say: "Slice timing is included in the JSON
when available. Some original DICOM files did not have slice timing
info. When slice timing information is unavailable use the ratio
TR/#slices."
The data is collected with a Siemens scanner.
If the slice timing is available it seems to be interleaved:
"SliceTiming": [
1.1025,
0,
1.165,
0.059999999999999998,
1.2250000000000001,
0.1225,
1.2875000000000001,
0.1825,
1.3474999999999999,
0.245,
1.4099999999999999,
0.30499999999999999,
1.47,
0.36749999999999999,
1.5325,
0.42749999999999999,
1.595,
0.48999999999999999,
1.655,
0.55000000000000004,
1.7175,
Could I just run slice time correction with the siemens option?
Best regards,
Maria
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