External Email - Use Caution Yes, please That's exactly what I mean.
On Wed, Feb 21, 2024, 6:44 PM Fischl, Bruce R.,PHD <bfis...@mgh.harvard.edu> wrote: > Can you clarify what you mean by “measure the intensities for the grey > matter regions”? You could for example compute the mean gray matter > intensity within each cortical parcel and each subcortical structure. Is > that what you want? > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu < > freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *ERNEST KISSI > *Sent:* Wednesday, February 21, 2024 9:45 AM > *To:* Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > *Subject:* Re: [Freesurfer] Grey Matter Intensities > > > > * External Email - Use Caution * > > I think these are not grey matter but cortical parcellation. > > FSL can output grey matter segmentation but I do not think freesurfer has > such an output. > > In aparc.stats (rh.aparc or lh.aparc), there is only GrayVol and no > intensity measure. I want to know how I can measure the intensities for the > grey matter regions. > > > > On Wed, Feb 21, 2024, 5:25 PM Huang, Yujing <yhuan...@mgh.harvard.edu> > wrote: > > Recon-all outputs these 3 aparc aseg volumes: > > > > aparc.DKTatlas+aseg.mgz > > aparc.a2009s+aseg.mgz > > aparc+aseg.mgz > > > > > > Are these what you are looking for? They should work the same way as aseg > volume. > > > > Best, > > > > Yujing > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu < > freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *ERNEST KISSI > *Sent:* Tuesday, February 20, 2024 3:22 PM > *To:* Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > *Subject:* [Freesurfer] Grey Matter Intensities > > > > * External Email - Use Caution * > > Hi Freesurfer team, > > > > Recon-all output shows the white matter volumes and white matter > intensities of different brain regions but only shows grey matter volumes. > I want to know if there is a function or a flag to also get information on > the regional grey matter intensities. > > > > Thank you. > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > *MailScanner has detected a possible fraud attempt from > "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/1UXNewDL0uEHZDvbqpxFtennth614SLbFzdgsBGav0taydqcybBj4G8q7GjHQnREl56uawoYrjID8Jqk2000XIbLcEWFDatPdylmyz2uN2aH1siCACWW6evLBvQosxCRDhWf6ZS9WUg5FamyE7GUKXITd6VfSlgnYpiLwIXHKGPbMVBZ2RaYK1LgrX2bx0ouuSkZx1VK43tbwRuEjy32XqvzyazVrvuWbRJv44rfP1gutOpq7QktNlU9gHOrN0B7oCafyrg28zQ-aS8DPWdEbCxuDYPRp-gwnPOaYkPEoP94EKEi-FqDh4op7BxY-sIlR/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > <https://secure-web.cisco.com/16ifYTsux0iUNjv1oYt9Hv-c1-WpEkOHYOrBq7h3PWyvvS76iScX_WZ2o8lNEaIpa7qoiyDGPhAqI6bC1dHM7bd_Vk_eG55Dj2LfAA0w8W1JH8Gxa-FPjNttxVj00sCJD7OFiTODAbS8thnuOjDATFw5xNSzFI49sqFFsPcZvcQxUGdb7i6Ug8FwqPnD1lh7oyCqLgB_SKeSCqspHSLCW3-OInKWuEem9SSGwzsb96fKTAIdbRUvkhjdxzPv1EG32Xp7e3DkEiGrk6rTPtRmfUU3pz19N6hdnDR6ZEF4Gacf-Gg6hHit5L3yfilTeIqwI_OsthS_zeC-UAbknjzsMcw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> > The information in this e-mail is intended only for the person to whom it > is addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General > Brigham Compliance HelpLine at *MailScanner has detected a possible fraud > attempt from "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/1V9NioPMXc9axn43oM3mW2KTLBgJx5O6forHFMt1jYRQOFnI-o49PLQHU2tyqaY2_qpY_h0J-0ka2oWJMgaqgs_93Qp-h_yhZFHw0MZvpdm-b06qa0eMAphaE4ie3YadZD6otTgtJQsBroroAHuwNYQ3UXsSIxkboDUBf0ZbwQYRylDAlJ6OsWQdMH_aKCRY1svYqkxDSuCFuBwBJ0ITJEURRr_wHSYfIBbeyEHJ2byoN401K6fzxgoKbe6LUxH4kuTk02vLPQDJVfQwYaFVtrynRslt3TwVLtzSDyKwtdTpGAsDPV4hv6Co4a89Ss_fX/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > <https://secure-web.cisco.com/1q-BrgHL_vb8xjTASQUhIwoXdAJz5Qyfc6GaWd77uKoUfPKtFwVANxqxacQ7bR2mnKJXiVOVyC22CAWRx3hgqs03JfW_2QI1ZPYeC7kvWHyC5TlXQCqkTEApMINRVVZL-0A3g2fxKAScZFVIqujSq6E8xyG9tbP_M4ket6b5Voe6yxSyy-DBcbedcebX5XctsFWYQmWOUujnVYPWD5ulUfnNCXEA2dk6TVO2twzH8PU-lMQcbsh5yipQjZUnfMF8OuVackAnFHpHtr2W_jPc3gp82Igdnj30WodE71rS5PvIsHvYlbY-MTO5eXzsP2aJRnfBMrCzSWZ3z9lNFYLYUwQ/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> > <*MailScanner has detected a possible fraud attempt from > "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/1V9NioPMXc9axn43oM3mW2KTLBgJx5O6forHFMt1jYRQOFnI-o49PLQHU2tyqaY2_qpY_h0J-0ka2oWJMgaqgs_93Qp-h_yhZFHw0MZvpdm-b06qa0eMAphaE4ie3YadZD6otTgtJQsBroroAHuwNYQ3UXsSIxkboDUBf0ZbwQYRylDAlJ6OsWQdMH_aKCRY1svYqkxDSuCFuBwBJ0ITJEURRr_wHSYfIBbeyEHJ2byoN401K6fzxgoKbe6LUxH4kuTk02vLPQDJVfQwYaFVtrynRslt3TwVLtzSDyKwtdTpGAsDPV4hv6Co4a89Ss_fX/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > <https://secure-web.cisco.com/1q-BrgHL_vb8xjTASQUhIwoXdAJz5Qyfc6GaWd77uKoUfPKtFwVANxqxacQ7bR2mnKJXiVOVyC22CAWRx3hgqs03JfW_2QI1ZPYeC7kvWHyC5TlXQCqkTEApMINRVVZL-0A3g2fxKAScZFVIqujSq6E8xyG9tbP_M4ket6b5Voe6yxSyy-DBcbedcebX5XctsFWYQmWOUujnVYPWD5ulUfnNCXEA2dk6TVO2twzH8PU-lMQcbsh5yipQjZUnfMF8OuVackAnFHpHtr2W_jPc3gp82Igdnj30WodE71rS5PvIsHvYlbY-MTO5eXzsP2aJRnfBMrCzSWZ3z9lNFYLYUwQ/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline>> > . > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/1UXNewDL0uEHZDvbqpxFtennth614SLbFzdgsBGav0taydqcybBj4G8q7GjHQnREl56uawoYrjID8Jqk2000XIbLcEWFDatPdylmyz2uN2aH1siCACWW6evLBvQosxCRDhWf6ZS9WUg5FamyE7GUKXITd6VfSlgnYpiLwIXHKGPbMVBZ2RaYK1LgrX2bx0ouuSkZx1VK43tbwRuEjy32XqvzyazVrvuWbRJv44rfP1gutOpq7QktNlU9gHOrN0B7oCafyrg28zQ-aS8DPWdEbCxuDYPRp-gwnPOaYkPEoP94EKEi-FqDh4op7BxY-sIlR/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > The information in this e-mail is intended only for the person to whom it > is addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General > Brigham Compliance HelpLine at > https://secure-web.cisco.com/1V9NioPMXc9axn43oM3mW2KTLBgJx5O6forHFMt1jYRQOFnI-o49PLQHU2tyqaY2_qpY_h0J-0ka2oWJMgaqgs_93Qp-h_yhZFHw0MZvpdm-b06qa0eMAphaE4ie3YadZD6otTgtJQsBroroAHuwNYQ3UXsSIxkboDUBf0ZbwQYRylDAlJ6OsWQdMH_aKCRY1svYqkxDSuCFuBwBJ0ITJEURRr_wHSYfIBbeyEHJ2byoN401K6fzxgoKbe6LUxH4kuTk02vLPQDJVfQwYaFVtrynRslt3TwVLtzSDyKwtdTpGAsDPV4hv6Co4a89Ss_fX/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > < > https://secure-web.cisco.com/1V9NioPMXc9axn43oM3mW2KTLBgJx5O6forHFMt1jYRQOFnI-o49PLQHU2tyqaY2_qpY_h0J-0ka2oWJMgaqgs_93Qp-h_yhZFHw0MZvpdm-b06qa0eMAphaE4ie3YadZD6otTgtJQsBroroAHuwNYQ3UXsSIxkboDUBf0ZbwQYRylDAlJ6OsWQdMH_aKCRY1svYqkxDSuCFuBwBJ0ITJEURRr_wHSYfIBbeyEHJ2byoN401K6fzxgoKbe6LUxH4kuTk02vLPQDJVfQwYaFVtrynRslt3TwVLtzSDyKwtdTpGAsDPV4hv6Co4a89Ss_fX/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> > . >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline <https://www.massgeneralbrigham.org/complianceline> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
