You can try
mri_compute_volume_fractions
USAGE: mri_compute_volume_fractions
--o outstem : output will be outstem.{cortex,subcort_gm,wm,csf}.mgz
--reg regfile : can be LTA or reg.dat (if reg.dat, then need template volume)
--regheader subject
.
.
.
Which should output a multi-frame MGH file where each frame is the volume
fraction of (in order) cortical gm, subcortical gm, white matter, and csf.
Cheers
Bruce
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of ERNEST KISSI
Sent: Sunday, February 11, 2024 7:44 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Tissue Segmentation
External Email - Use Caution
Hello freesurfer team,
Please does Freesurfer have a function or a code for tissue Segmentation just
like in FSL that you can do tissue based segmentations into GM, WM and CSF and
also their partial volume segmentations?
Thank you.
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