It is whatever volume you gave as input to recon-all. If you tell us which
statistics you want to regenerate for another volume we can tell you know what
commands to run.
cheers
Bruce
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of ERNEST KISSI
Sent: Wednesday, January 24, 2024 9:05 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Freesurfer Intensity representation
External Email - Use Caution
Hi,
Please I made an initial enquiry about using freesurfer for MPF maps. The
feedback was that I register the MPF maps on their corresponding T1 images
using multimodal registration. I used FSL to do the multimodal registration and
then use recon-all in freesurfer.
Now I want to know what the intensity and the volume of the output in the aseg
file represent. Is it the intensity of the MPF or the TI and MPF?
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