What if you run glxgears command? Do you see 3D spinning gears or just a blank
window?
Ruopeng
________________________________
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Shawa, Zeena
<zeena.shawa...@ucl.ac.uk>
Sent: Wednesday, January 3, 2024 9:17:00 AM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Freeview not showing output
External Email - Use Caution
Hello FreeSurfer Developers and Community,
Hope your day has been going well and happy new year!
I'm attempting to visualise FreeSurfer outputs using freeview, as described on
the “Introduction to Freesurfer Output” tutorial, under the “Viewing Volumes
with Freeview” section (MailScanner has detected a possible fraud attempt from
"secure-web.cisco.com" claiming to be
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/OutputData_freeview<https://secure-web.cisco.com/1gxz0NYCFZQK8I7yoqBazXhNSxfbtas6xskrsStOsimpxep-CRHu-kt9xHa_jDMHycwgMGbK-R1EE1Wx1-27DmJLyMZMgFurBik3CudXcYGI6DBs8n9-VWwApw3DwaXmILbvsKW1f1OrgYxrhr5bIM9X2H_xDEw2Jo7W5d7sFmMKm4LVp9DSGKerrVezTrihKqSC6-52vVID3S1TVu-Tm4c7VR--K_GRqdcrQoyAHmZ5egxwViHpG3gE7FK5XeDFHQrZD2GqjUi7HNRyrGADz196SV1dcx3udIWduEStsQqmg1MXqOdGeq1UqDNtsoJjA/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFsTutorial%2FOutputData_freeview>
). The viewer launches fine and seems to load everything, but instead of
showing any output it simply shows a black screen in the middle (screenshot
attached). There is no error outputted in the command line either. The viewer
seems to work fine otherwise, and I have completed the Xming X-server setup as
described here: MailScanner has detected a possible fraud attempt from
"secure-web.cisco.com" claiming to be
https://surfer.nmr.mgh.harvard.edu/fswiki/FSL_wsl_xming<https://secure-web.cisco.com/12Wssvth0-cJDruIThEp84njg4hCdzZpcS7NBpfijyPxeJebO030r3OwPscWXgBNqe2XCpYhwoMiw-6XJnXeNSS6LsLtcxqrp2_U0hCa5Fvr4u5bu8-66-i16PnXQBV2TYic_r07skuoRAkLAd2pupjAQbArZZumqLreeL4GV-cfT8WQoBTN_TWwnOHDsFmX_HYhVeoiEbxPOKgQ10Ef1V-bszmAPXLBMPmCxbXIHCjOeigj0m6pzf14hmD6PjfYebcLiNUo3BSPRZVxCt7dE953_uTCZvyoobKGwzqnVvki1jlBhWGJFoc27s8Y-S9yh/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFSL_wsl_xming>
.
I've searched the archives and GitHub issues and cannot find a similar error. I
would appreciate any feedback on how to troubleshoot this issue.
Thank you very much for your understanding and help!
1. FreeSurfer version:
freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460
2. Freeview version: Version 3.0, June 14 2023 build
3. Xming versions: Xming fonts 7.7.0.10, Xming 6.9.0.31
4. Platform: WSL2 Ubuntu 22.04.3 LTS
5. uname -a: Linux LAPTOP-4153LQMG 5.15.133.1-microsoft-standard-WSL2 #1 SMP
Thu Oct 5 21:02:42 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux
6. specific command: freeview -v \
good_output/mri/T1.mgz \
good_output/mri/wm.mgz \
good_output/mri/brainmask.mgz \
good_output/mri/aseg.mgz:colormap=lut:opacity=0.2 \
-f good_output/surf/lh.white:edgecolor=blue \
good_output/surf/lh.pial:edgecolor=red \
good_output/surf/rh.white:edgecolor=blue \
good_output/surf/rh.pial:edgecolor=red
Sincerely,
Zeena Shawa
Zeena Shawa
i4Health PhD Student
Alan Turing Institute – Roche Community Scholar
Research Group UCL Centre for Medical Image Computing
[Title: LinkedIn - Description: image of LinkedIn
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<https://secure-web.cisco.com/10zA_WZOkmHp3Fh1W3Z_sjeqIo7FojuA9hL4g-JNcgF3m3JueOKwaQZYt89PE47C15EQNA19-aZMWJhuz1SmbzffKxD7sKNeXuQi8otqn_zmTQmTGqvmSD1lsSqCnttw6flVaDfEdaTxztGZU6lIfzBnus6XnN6fjFnw3zBYgwtDG-FV8ToeptaGEbgGd0x8cddnBQYWcOqriE19BW_3aBzCrmwWJlowhTJr5k6tRVNmm9kGO97QG7cj17ExkF4W9ef9-1pcdxSEkMaMKqWc5qvNdGptusYNVA7hudI6dyQGT0eG3mLud8bS2xAAwzdHb/https%3A%2F%2Ftwitter.com%2FShawaZeena>
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