External Email - Use Caution Thanks, YuJing Tim
On Monday, December 18, 2023 at 07:38:14 AM CST, Huang, Yujing <yhuan...@mgh.harvard.edu> wrote: <!--#yiv8856416734 filtered {}#yiv8856416734 filtered {}#yiv8856416734 filtered {}#yiv8856416734 filtered {}#yiv8856416734 filtered {}#yiv8856416734 p.yiv8856416734MsoNormal, #yiv8856416734 li.yiv8856416734MsoNormal, #yiv8856416734 div.yiv8856416734MsoNormal {margin:0in;font-size:11.0pt;font-family:"Calibri", sans-serif;}#yiv8856416734 span.yiv8856416734EmailStyle19 {font-family:"Calibri", sans-serif;color:windowtext;}#yiv8856416734 .yiv8856416734MsoChpDefault {font-size:10.0pt;}#yiv8856416734 filtered {}#yiv8856416734 div.yiv8856416734WordSection1 {}--> The conversions between tkrRas and scannerRAS are as following in Freesurfer: tkrRAS = tkrvox2ras * inv(vox2ras) * scannerRAS scannerRAS = vox2ras * inv(tkrvox2ras) * tkrRAS Best, Yujing From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu>On Behalf Of Eric Tsang Sent: Thursday, December 14, 2023 5:51 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Convert Scanner RAS to Vertex RAS External Email - Use Caution Dear All, I have great deal of trouble converting scanner RAS to vertex RAS. I have tried a couple of formula (in the following) which had failed to produce accurate coordinate. [tkR tkA tkrS] = [ScannerRAS 1] / (vox2ras * inv(tkrvox2ras)) [tkR tkA tkrS] = [ScannerRAS 1] * inv(vox2ras0) Both of these formula produced distorted coordinates. Please help! Thanks, Tim _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1LKq6LFw9Bxf-cSK60HVNbZ5C3k2nSDuixUOAOtigUjLBfnzBlQtmDeIchQR3KLJ2IakPIVe9_J6_M-QnGIOxfDopp7ocnyY-v7VoGNGdQBitJhLJUDdnG9fizEO4tA9LeL_pS7-uAL23x8v_tdGekJ6PRkNTcZBlOQAG0j_volOpBqNX3l8YRqFmLLZH4vfcvmNokwhqfB0Ns_McvVPEydsYStvGYv_nbBuDejL04IF-rCteq-MKRuKyGqbwmAubw_7IJGZAXTUI8xDwHP1HADQVR6b4y1-9JbrVylhJin-zfMI8DYW7YbhvaqRk68bTN4BKOWtERVjfIVY3aRfXqg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://secure-web.cisco.com/1quW2y9v1ulbxTVdXr7CGvQnZnbtLqSaAyduhyydpmX9uIdG5H6Gbl6NKmYZuLG82NBH8g4BrLazmkX63E-Xiu5DeAaYEA41bHafmQcNkE9tyU7HCBDMOuABOD9ObmBjIQW8xFQKtQPyWYmFi7fNxZ3kvFHCJNcwoDPzPeTJi9K_m2xK-XNGAB9UwPTbbWu8FE2axklbGmr5inzX1NhmGLoQk7qehvTkjwzKiuWN_MefyPD8whOqKpX6QLJ7dtRb64EZ3si4CmyUegr--mtYPAKlcaMEKDAUVZ2DSiLHrFqgGWieyDxP23y6CzB5cqOxgHZ81wPfufeNA6LdKI0o87Q/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline <https://secure-web.cisco.com/1quW2y9v1ulbxTVdXr7CGvQnZnbtLqSaAyduhyydpmX9uIdG5H6Gbl6NKmYZuLG82NBH8g4BrLazmkX63E-Xiu5DeAaYEA41bHafmQcNkE9tyU7HCBDMOuABOD9ObmBjIQW8xFQKtQPyWYmFi7fNxZ3kvFHCJNcwoDPzPeTJi9K_m2xK-XNGAB9UwPTbbWu8FE2axklbGmr5inzX1NhmGLoQk7qehvTkjwzKiuWN_MefyPD8whOqKpX6QLJ7dtRb64EZ3si4CmyUegr--mtYPAKlcaMEKDAUVZ2DSiLHrFqgGWieyDxP23y6CzB5cqOxgHZ81wPfufeNA6LdKI0o87Q/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> .
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer