Your recon-all was killed – “Command terminated by signal 9”.
Was your VM VirtualBox up and running the whole time?
Best,
Yujing
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Fargol Rezayaraghi
Sent: Friday, December 15, 2023 3:15 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] mri_error_no_clear_message
External Email - Use Caution
Hi FreeSurfer Team,
I hope this email finds you well.
I'm trying to use a T1 image to get the aparc+aseg and wmparc nifti files.
I was using this command: recon-all -s Subject1 -i T1.nii - all -notal -check
( I used recon-all -s Subject1 -i T1.nii - all first, and after getting
Talairach error, I added -nota -check at the end).
I'm getting following messages without clear error number: recon-all -s
Subject1 exited with ERRORS at Thu Dec 14 21:18:02 EST 2023
For more details, see the log file
/home/developer/Desktop/freesurfer/7.2.0/subjects/Subject1/scripts/recon-all.log
To report a problem, see MailScanner has detected a possible fraud attempt from
"secure-web.cisco.com" claiming to be
http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting<http://secure-web.cisco.com/1cQznhKx0XPPZTJqsioLqCSeP_2I8A9nJBXfsYwGFwxBXmD7RKRMw6kJmasSt1kAVp1tCqVQIurRZP1ILpcB8zCphuDfC33ZrWCnEEM0UyCkUQ68sHTdVSrxdZHVfYGMhhkNH8lAuG8DZXqdGtv1K-PKnPqBhTp1Ui_GDs6jgZlw8V857cEz0W9pSlxkxTbuH7OOl4JzgLWABGJ9dIX-ET2sOtFoqAy_84Lb6yRzqYgqmvW7LsNBM5TgMiCap9DnItZnw4q1L8-QvO-hGF1VSkPwRzSg2c3In5QTT9Hr_DSVyg9PbERLA2rxo_6FtmskDiW-vYccwKPsbbYN_m1zKcg/http%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FBugReporting>
The version of the freesurfer:
freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b
My platform is ubuntu 18_04_06 on Oracle VM VirtualBox
I've attached the log file.
--
Kind Regards,
Fargol R. Araghi (Rezayaraghi)
Ph.D. Candidate, University of Washington
Department of Mechanical Engineering
MailScanner has detected a possible fraud attempt from "secure-web.cisco.com"
claiming to be
www.Kurtlab.com<https://secure-web.cisco.com/1OE6aYFeTkmWM7FGsUCe4yHngfS6aQZieqg2uFkxfDu0quqKdRIFbD_f0xBwsUxcZw_17mtWE6rsfMAp8GcFWW6emf_5CITLoC22EaCXQva91Nob_g90awow6SxgIM3DBvjwJPYMQAawIz3WwH6xNJiIYGpJ9DPL1v4YGBFF3uydsqG6v57s_aUws079xLWNk2mlbU0U-WpvOGTleTbJQf9LVd322VXdtfdveMq4mn1w_wA7hOvEtTcu5VCGyNOxfrKPOTY2DvaZsEhF7YW11JYzyjiSgHl7p1SB-TZqoMh41B3OaF5vqAMyXsDhrk6UoT0cPKD8Is9zNQVkT9c31kw/https%3A%2F%2Fwww.kurtlab.com%2F>
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