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thanks alot Yujing for your answer.I changed the SUBJECTS_DIR to my external
hard drive before began the analysis by the code: SUBJECTS_DIR='pwd'
--------------------------------------------------------------------------------Yunus
Soleymani
Ph.D. Candidate of Neuroimaging Tehran University of Medical Sciences
soleymani.yu...@yahoo.com+98 914 526
9298--------------------------------------------------------------------------------
On Wednesday, November 29, 2023 at 04:35:14 PM GMT+3:30, Huang, Yujing
<yhuan...@mgh.harvard.edu> wrote:
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Hi Yunus,
‘fsaverage’ is an average subject comes with Freesurfer distribution in
$FREESURFER_HOME/subjects/. fsaverage is a template brain based on a
combination of 40 MRI scans of real brains. It can be used as a common space
for group comparison.
What is your SUBJECTS_DIR? You should not set SUBJECTS_DIR to
$FREESURFER_HOME/subjects/.
You should see ‘fsaverage’ as a symbolic link in your SUBJECTS_DIR.
Best,
Yujing
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu>On Behalf Of yunus soleymani
Sent: Wednesday, November 29, 2023 5:54 AM
To: Freesurfer Support List <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] fsaverage folder
External Email - Use Caution
Hello Freesurfers,
I am currently using the parallel recon-all code in Freesurfer to analyze my
subjects. While reviewing the results folder, I came across a folder named
'fsaverage' which had a locked icon next to it, along with the folders for each
individual subject. I am curious to know what this folder is and how it could
be useful.
Thank you for taking the time to answer my question.
Best regards,
Yunus
--------------------------------------------------------------------------------
Yunus Soleymani
Ph.D. Candidate of Neuroimaging Tehran University of Medical Sciences
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