External Email - Use Caution Thank you for the help. It was my bad, I should have changed the Display port to 1. $ export DISPLAY="172.23.144.1:1"
Best, Mahdi On Mon, 6 Nov 2023 at 22:31, fsbuild <fsbu...@contbay.com> wrote: > Hello Mahdi, > > If you have not already done so, you might want to look at the Freesurfer > wiki notes about setting up an X-server on Windows so linux applications > running in WSL can display graphics using X-windows, > https://secure-web.cisco.com/1mRNN4MVUol3W8CnoB0t_Ukklvy_LWYfeDwOIEfiLfT5jInbyzndn2u3I43Y0kUpVrWqatR_Iz7HmIOLpqqNlSa8iBjH390-X7V2WXCdDnmwd6DIPU0sAm2KnOyjAh2WaWZ96iW1uvNZ9Rbg1r0TygGQ_R2VR7tAIpeS7whHMLXcfNnMs4aOB6mR14agRUIFjtkSDhMMx2rTqEVa2RAics1NQ6vTi0G79Agf8lGFbTlG3uglN4iogRNAmtcSuPsu01GC--CxMoXyavonya_6mwkdAYuEgFKywqvsKaCNS5Fds4j3QONE1F-KT2jxNuBulOVTESu0MerUKSWNKtu9TiQ/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFS7_wsl > The setup listed > there is for Xming, and you may want to look at both > https://secure-web.cisco.com/1_MFJmdBbOLYbSoW9Ukq5SgcfgA_ZPdkMrakmhniwwoccEftvS6CWHASvY3sG0nH-4kcuSsOpVJv95bi_oOMsGOT1AlVvx6udeItDQwAnwZLm1tJnM_wEsuHXkgSAKR96DA0Ob6Hp92NDiEN21HSG3Fazv6FvuEGF3FJQr-ipoiqKIIpAlJx1-M8MCvdmFyF7vuf_ujPeKq4DKUa3wqmWeuQq7Qrl__gfYaoR6KYqMeXO5u4oH1B1B0i8U81sTVp0ljsUjBpDDxXpQ2G-Xg0PsZlffHGqJuM75VtzNIO_Z8mmX5ow6eQ1_Jg4NAKEs-S3WmS4Yo7Q00gX-9yG6b9XSg/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFSL_wsl_xming > and > https://secure-web.cisco.com/1NdU0BoZky1ppgHOmLBD71xp6n6ZhQMqHqMI3aY_pGKIcdX93N_hgqkDkIKmi7Rb3aRx_ASwwaDShhBcfjUxXez4QFj0gJwE1zrrT68iWALgNLFX3fNsJ48Pow5ZkfX-jCFqV_zKqUurunFpxTI2PARLTRX7NDt13yDR6dTvSxDhVp4lov67CgA6YIoyLNGNrH5JgitLwlwczUfyJ0TrqxdWIUyaFUvZLCLScGTFTlzRI1cDZWZroBAuYiKC-yJvJcDftOvdEPl9_Lbu3SxkkGAdLmzuzPh2hqxcKcvhCP2dPjzlH_k5Oq0v_8NnSA6wmW755LyV92BNLHRMK7COauw/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFS7_wsl_ubuntu > > Some people have found Moba X-term, > https://secure-web.cisco.com/1Ed0Br1QC7rO_nMBQtEpcxYqBr3iIXuNBUKsMz0Fpu9biqWb0tZUdTKbfzznCGX9VI_hv-nei9C4H6RpyCJh8_oZA8Ag6FFo8_y1tesQ3QDdeq9GoDj5DN0FAmqJTpKuxGbjGxGNQKWeoLVIwIiaQwFar8THIYPM0nltpnlDGbpHdNoDR4g_Gc-_Ue04ns6_nbj4P8rfeE0uXmBiI1e1OflTVQml-ZN-xmereJXXaJ-z9kramdANndlVyy_heAwnPQJDCuaxSVB48_tEH1JyvsiUeKoyIDoDoqUus-fB0Fh8M2X-CQg_IKrwt3-Xe5DLzbXFXYVwVuUNvkeJ1lNPAhQ/https%3A%2F%2Fmobaxterm.mobatek.net, > easier > to setup and test with glxgears compared to using Xming. > > It’s a good idea to get glxgears to display the spinning gears in an > X-Window before trying to run freeview. Or the display of glxgears can > work, but freeview may still display a black/empty screen. That can be > from the graphics card drivers on the Windows host not being up to date or > not supporting more recent versions of OpenGL. > > There are also quite a few postings about WSL on the freesurfer list. > > - R. > > On Nov 6, 2023, at 13:48, Mahdi Babaei <mahdibabai...@gmail.com> wrote: > > External Email - Use Caution > > Thanks for the reply. > Yes, glxgears command shows a blank window. I thought about it but > couldn't find any solution. I'm working on WSL2. > > Best, > Mahdi > > On Mon, 6 Nov 2023 at 13:16, Wang, Ruopeng <rwa...@mgh.harvard.edu> wrote: > >> It sounds like an openGL rendering issue. If you run glxgears command, do >> you see a blank window or spinning 3D gears? >> >> Ruopeng >> >> On Nov 6, 2023, at 12:37 PM, Mahdi Babaei <mahdibabai...@gmail.com> >> wrote: >> >> External Email - Use Caution >> >> Hi Paul, >> >> Thank you for your response. There was an issue with my description. I >> meant to refer to volume data. Freeview is displaying a black view, even >> though it loads the images. Unfortunately, nothing is visible. >> >> Best, >> Mahdi >> >> On Mon, 6 Nov 2023 at 11:30, Wighton, Paul <pwigh...@mgh.harvard.edu> >> wrote: >> >>> Hi Mahdi, >>> >>> I'm afraid I don't know what you mean by "Freeview opens fine but when I >>> load a column in it just shows a black view." What is a column in this >>> context? >>> >>> As for registration between PET and MR, have you seen this page? >>> *MailScanner has detected a possible fraud attempt from >>> "secure-web.cisco.com" claiming to be* >>> https://secure-web.cisco.com/1ESe-kTPUKLBexWd97c5IjKvLGFxdGpu_wGcbdl2Q8Oe4-JxivjqTxISm10A1h6BHAjPb_BeiUFnuj6s7_F-oEkE0TyZEO0Am1UZJzmE6Y3NO_4Ywf-C33nKLUVV6g-nY-aE3L-FTo_WDxyt3vbbchN7HcEc4FrX33QIgoyChNlbo3mTK-4VPwj_I5cP1MukkxzSmc6lxnHA1quipf4p4yzT6egQXNTt2elj9q683hcXWxgTA0fjz9G2VHKwfLR-6-2e7ySCWrPupB_5PxHqQ_i2rXg6Vq2ehjDzQd3jwFrxv_qVE2_ow4DpeZahoeEyGXLxgvPu4ltcpll2z3ul0xw/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FPetSurfer >>> <https://secure-web.cisco.com/18vNjlLmSGWFTunMb7wArlqA9mQWDmVewpANlk56uM_4t5BjrQ6JC20xM-IfCGjRTVm8JHBTAKDDjGTfWTlR0Tl7pWwpQDTa9iUq5xuXmzq5FhvZYz4CougtZUc0KSwUghDHRf5GSNhe450T_mfdBXXqZEagt2weB4ir46dEC1DQpQ8FV7PEIuiLy1z3HVp3gbjCsii3j4j03rTzmmPs5FUP-VmkbKWIa7_dLCtbBDJidWYD2UEyV7ab5r6eKb0byoeD5Qd53y4Iok2NVwnUXajXd4ZCe1R8wQt8Ndoe2_mSWLSLu8ae6eDQHoXaJeC_iT1Z1F4-j4b4v9uBN0Fdvvw/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FPetSurfer> >>> >>> It suggests using mri_coreg. >>> >>> -Paul >>> >>> ________________________________________ >>> From: freesurfer-boun...@nmr.mgh.harvard.edu < >>> freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Mahdi Babaei < >>> mahdibabai...@gmail.com> >>> Sent: Sunday, November 5, 2023 2:25 PM >>> To: freesurfer@nmr.mgh.harvard.edu >>> Subject: [Freesurfer] Question about Freesurfer >>> >>> External Email - Use Caution >>> >>> Dear FreeSurfer Team, >>> >>> I'm currently a PhD student at Stevens Institute of Technology in New >>> Jersey, USA, where my research focuses on MRI to PET translation. I have a >>> number of problems. Freeview opens fine but when I load a column in it just >>> shows a black view. Have you ever encountered this problem? >>> I'm so confused about using the tool for registration. Can I do >>> registration between MRI and PET modalities of the same subject using >>> "bbregister"? >>> >>> Best, >>> Mahdi >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> *MailScanner has detected a possible fraud attempt from >>> "secure-web.cisco..com" claiming to be* >>> https://secure-web.cisco.com/1dKh1Pfb4AQudRfLu7gyxSNhWUx_aIOcis-32s9gTKEt3GQ3AZV2mR2SfSHSQNHl_uBM50fxjEEwKzO5k6De6TP48s46Di6Q2tcqXlcUC7L2jMdwpcpiIZMd_ZxLwofeNsSPdFDVXvDnNXtufYnEjWZ63Qrk9y42orGe24-kVJlvhq3YWAu7Z5-_CtI_LLoJUV5lRxFJfFzHSwpa8ryyQILZhYr5Te3QyOB-whOYsTPJvFOTs6-jCJ1G6bglJT8jZm840LyTS5GikJddNFLaQhMGJ6gZ5x6JylSAIZZwxY8bUgSMDpELFQDp1z6rttC4z4bJStyGuOzD1sQdLgvwK4A/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer >>> <https://secure-web.cisco.com/1CXTsUV37CfUTW3oZRJvaO2BxHul7xKuFDYfv1wThzJ5IE6-V0mBDybd5X-iACaRakRLqQWtXSWV7U-0yNNHC35tE8jr8dHUvvmUPD0XPkcZ7LDdw_yHZw3HPMWivcGoVRmhI49jWjUJF1R10aaTZ74is17hRMQVLNIdbQXFF2AF_8ue2meHzN4zsY9AQRD5BVH3xuuRMvXAgrJARilJrtAHqn_4NpFr1vTFQbAmXmNcz6WF6blITCF2KECL8Yh5NeBsIPi9toUhOT2u3p_UGVMuV9QQ80r_Zv3DKOoa8ujEprUUjbRuBsVtChqOLblstnrFJmX2ghJWA5PKB4RLx7Q/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> >>> The information in this e-mail is intended only for the person to whom >>> it is addressed. 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