Hi Eva,
The error is "gauss_4dfp: error while loading shared libraries:
libquadmath.so.0: cannot open shared object file: No such file or directory".
Make sure your system has libquadmath installed, and it is in your
LD_LIBRARY_PATH.
Best,
Yujing
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Hensenne, Eva (Stud. FHML)
Sent: Wednesday, October 18, 2023 8:57 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] TR: Issues at the "tailarach_avi" transformation step of
recon-all
External Email - Use Caution
________________________________
De : Hensenne, Eva (Stud. FHML)
<e.hense...@student.maastrichtuniversity.nl<mailto:e.hense...@student.maastrichtuniversity.nl>>
Envoyé : mercredi 18 octobre 2023 14:41
À : freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>
<freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>>
Objet : Issues at the "tailarach_avi" transformation step of recon-all
Dear Freesurfer Developers,
I am currently running recon-all on a UNI scan. This scan has already been
partly preprocessed by a script called "presurfer". This presurfered scan
should work with recon-all (and it indeed works for my colleagues). However, I
have systematically an error when I try to run recon-all on those files.
The error says:
"talairach_avi log file is transforms/talairach_avi.log...
Error:mpr2mni305 failed, see transforms/talairach_avi.log
Command exited with non-zero status 1".
I attached you the talairach_avi.log and the recon_all.log files.
1. Freesurfer version:
freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460
2. Platform: Unbuntu 22.04
3. Recon-all.log: attached
Best wishes,
Eva Hensenne
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