External Email - Use Caution Dear Yujing
It worked. Thank you so much for your time Regards K Eswar On Tue, Oct 10, 2023 at 7:48 PM Huang, Yujing <yhuan...@mgh.harvard.edu> wrote: > External Email - Use Caution > > Can you try to source your Freesurfer environment? > > > > For tcsh or csh, > > setenv FREESURFER_HOME <freesurfer_installation_directory>/freesurfer > > source $FREESURFER_HOME/SetUpFreeSurfer.csh > > > > For bash, > > export FREESURFER_HOME=<freesurfer_installation_directory>/freesurfer > > source $FREESURFER_HOME/SetUpFreeSurfer.sh > > > > Best, > > > > Yujing > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu < > freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *K Eswar > *Sent:* Monday, October 9, 2023 1:59 AM > *To:* freesurfer@nmr.mgh.harvard.edu > *Subject:* [Freesurfer] mri_synth functions errors > > > > * External Email - Use Caution * > > Hello Freesurfer Developers, > > > > I am attempting to process mri_synthseg,mri_synthsr,mri_synthstrip and it > shows the following error > > > > For mri_synthseg and mri_synthsr: > > Traceback (most recent call last): > File "/home/sgbc/freesurfer/python/scripts/mri_synthseg", line 10, in > <module> > import surfa as sf > ModuleNotFoundError: No module named 'surfa' > > > > For mri_synthstrip > > Traceback (most recent call last): > File "/home/sgbc/freesurfer/python/scripts/mri_synthstrip", line 5, in > <module> > import torch > ModuleNotFoundError: No module named 'torch' > > > > I am using linux operating system_Ubuntu 22.04.2 LTS > > > > I have recently installed infant freesurfer and I don't know if the > problem is following to it as I expect path might have been changed > > > > I tried looking for these errors in the forum, however I did not find the > fix. > > > > Thank you for your time and consideration > > > > Kind regards > > K Eswar > > Project scientist > > Sudha Gopalakrishnan Brain Centre > > IIT Madras, India > > > > > > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/1o3NhQvsyUZN14AJJUYOPPUJZEm-DEbIFlgFLPay6GD988EPgNrH5tsHnoQoHm0LsNgfXpHl2SXR5ca794sBaGaxjHln6pI8v1aJFJwfERshzrPMzjMP2GOm7T7B31Cb7STLuKCfr4v_VvSzGRNjcTVz4n9nLwyHwCR6bGkbHFBJjZ0jfHZDHIDqKx_pJC87wGaqHtjTbTcxkmaA0j62CyMA-K7hcYMXGTG5VavFHS3G-6bTZhAITfF0MD_JsOIelNlHkfE5Du8vpxMsFh5sv1aTinoAGTUXWKVuxsJjKUr9EMBhfpwYGkr96_zIK201g6dSHHBSXz_XoufYn23D1fQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > The information in this e-mail is intended only for the person to whom it > is addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General > Brigham Compliance HelpLine at > https://secure-web.cisco.com/1_4WCKJ7ICCWnkoSI-xXque6QvTKszuVpzK2WIpue65TMQsWQjNZ-yZeopjseJRe6IBmgmu8Ir_TgOAUE7CIHU6WBGn0hqCmFfflbW5enB3Tw7dnwVGieNYtiidbnBerxjuochqt-wtU1a6C4H2miqOd26smJO2et8RKooKHGcG5Tha_NC7lWoSfp1Y5ZY0GqDmqyQlw_GuDashDQjCrgyIAVyMaPUx1PwZPSQseyViahmmsH-8hb6VgXtc8MvlzLeuXCTwWSrMsMGkvm8dY_unCi8A6PTA0XB6u8wPBcLZWhf9XNMOxb5HUMaS6eNGOs8MFrYmqrDSQczw0a_bLxkw/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > < > https://secure-web.cisco.com/1_4WCKJ7ICCWnkoSI-xXque6QvTKszuVpzK2WIpue65TMQsWQjNZ-yZeopjseJRe6IBmgmu8Ir_TgOAUE7CIHU6WBGn0hqCmFfflbW5enB3Tw7dnwVGieNYtiidbnBerxjuochqt-wtU1a6C4H2miqOd26smJO2et8RKooKHGcG5Tha_NC7lWoSfp1Y5ZY0GqDmqyQlw_GuDashDQjCrgyIAVyMaPUx1PwZPSQseyViahmmsH-8hb6VgXtc8MvlzLeuXCTwWSrMsMGkvm8dY_unCi8A6PTA0XB6u8wPBcLZWhf9XNMOxb5HUMaS6eNGOs8MFrYmqrDSQczw0a_bLxkw/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> > . >
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