External Email - Use Caution I don’t see an error message in what you posted below. I would not assume changing soft links to actual copies of the same file (by a different name) will work, i.e., anything that makes a soft link may subsequently test for a soft link using the link name. That test will fail if the soft link has been replaced by an actual (duplicate) copy of the file. The expectation is when writing output e.g., during recon-all, that SUBJECTS_DIR points to a linux compatible file system that supports creating all the Linux file system file types (including soft links) and support all Linux file privileges. -R.
On Sep 24, 2023, at 01:58, Mervin Tee <mervin...@nus.edu.sg> wrote: External Email - Use Caution Hi, I'm trying to complete my recon-all command. I'm currently working on Ubuntu 22 and processing the images from an exFAT drive.After digging a bit, I realised that symbolic links cannot be created on exFAT drives. I then came across another post that suggest to change all 'ln' to cp instead. While that works for the remaining steps. It started exiting with errors at this stage.The stage where it stops#@# Qdec Cache preproc lh white.K fsaverage Wed Sep 13 15:40:33 +08 2023The error that was in the error log.CMD mris_preproc --s ED751_SAG_MPRAGE_p2_NON-SSc.nii --hemi lh --meas white.K --target fsaverage --out lh.white.K.fsaverage.mghWhat should I do to resolve this issue? Cheers,Mervin Important: This email is confidential and may be privileged. If you are not the intended recipient, please delete it and notify us immediately; you should not copy or use it for any purpose, nor disclose its contents to any other person. Thank you._______________________________________________Freesurfer mailing listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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