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Hi Sebastien,

Freeview does not support voxel-specific alpha channel. You can only apply a 
uniform opacity.

Ruopeng

On Sep 8, 2023, at 9:16 AM, Proulx, Jean Sebastien 
<jspro...@mgh.harvard.edu<mailto:jspro...@mgh.harvard.edu>> wrote:


        External Email - Use Caution

Dear Freesurfers,

Is it possible to input an alpha channel to freeview? Otherwise said, can one 
obtain a voxel-specific opacity?

I would see something like
freeview underlay.mgz overlay.mgz:opacity=opacity.mgz
where the single opacity value is replaced with a file containing the desired 
voxel-specific opacities.

Thanks for your help and
Have a very good day!
Sebastien
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