External Email - Use Caution Very interesting. Thanks.
On Mon, Aug 28, 2023 at 2:52 PM Douglas N. Greve <dgr...@mgh.harvard.edu> wrote: > External Email - Use Caution > > You can try > mri_binarize --i aseg.mgz --csf --o csf.mgz > to get a binary map > Note that the aseg does not have sulcal CSF labeled. But you can get that > with something like > samseg --i orig.mgz --o samseg > Then run mri_binarize on the seg.mgz file > > > On 8/27/2023 3:05 AM, Michael Mc Laughlin wrote: > > External Email - Use Caution > Hi, > > recon-all does not seem to produce a map of CSF. My research is especially > interested in how CSF is distributed. Is there a way to get this? > > Michael McLaughlin, > > > _______________________________________________ > Freesurfer mailing listfreesur...@nmr.mgh.harvard.edu*MailScanner has > detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/1xEI-BFJZc9WdXsjH-pCbsGgz2cwGeS_u8BwTY1IO8tIaBVYLZeiI4dmhx4FE9dSFxFppJ0co_Uu-a6BSff2lBGK-cw0t1VxIIc20wZOuvsv02USUfZ699ihhsMs7P_zYOQ07F9nGC3iYmi0EVXt_IC1LyuehGsHqhQ2vfCavv3k5uHblPN2YIPXp9BZK2eWcNjzfc-sfmB5sWKzsvUxI9lAQTPmJSb0uVPI78-ZZpjAUaiymdfbQTHBwgMypNcjq0n6rhsEIZn0AQZnW1kFPLu90o0Zpr923i6dEwb8k3_p8tx2yyNWTo2NWnO_Ci_I_7mUQbiNpzbwDtFpcyKO1xQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > > <https://secure-web.cisco.com/1iJ4dFb3UtlL0gnZ74BTRmuoE4genf7E4a7Aboka6nBaMrlSyrxQRu3CdZt78XICmqhX0JVVIiF_GQ0PJMpp5PAMrZAykVhxCwtsfnhE-IgRBQSUsnHWfFGLlgqJvpcMRSnmv4NfggdEQQ_kPwKXE6DoL0HdFP6h01fCmuGfE_NVZZBYq5adPaeUxx5m2l5mzKsmPuuXFUYneUfB25nKeV187n5mibcSuwkIYLPd3uoXGt27EaVBq7hOzdKu42AN5APXxSla7Ryn8pL8Ep-GDCA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/1xEI-BFJZc9WdXsjH-pCbsGgz2cwGeS_u8BwTY1IO8tIaBVYLZeiI4dmhx4FE9dSFxFppJ0co_Uu-a6BSff2lBGK-cw0t1VxIIc20wZOuvsv02USUfZ699ihhsMs7P_zYOQ07F9nGC3iYmi0EVXt_IC1LyuehGsHqhQ2vfCavv3k5uHblPN2YIPXp9BZK2eWcNjzfc-sfmB5sWKzsvUxI9lAQTPmJSb0uVPI78-ZZpjAUaiymdfbQTHBwgMypNcjq0n6rhsEIZn0AQZnW1kFPLu90o0Zpr923i6dEwb8k3_p8tx2yyNWTo2NWnO_Ci_I_7mUQbiNpzbwDtFpcyKO1xQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > The information in this e-mail is intended only for the person to whom it > is addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General > Brigham Compliance HelpLine at > https://secure-web.cisco.com/1s8F3GDfYbpR-qoBAK3osi7N-EY36OYvqKuqHr_Aj8pSWQ3cWbUEzu-vKr2J0W0RCW0J6HHCRpE7Om3d3-u6xtRozKWaz-P5fIWSa0oOZwQMPXePyol92F4HeOdky4GJEiGWZTmEkFip3q6Xo2NQgIx6AptmFtrrS2vp8cFxkf0kkpSi7KiHF1LnjJBKp68ErpYVJz2-jkoR4tqHKy3Dwbm85FU0dAFOHTIPZ5sm7_kSeQNZRnKTic_zSvggmmqgwwYRyxQe5L0AAdx9T1MAZWsLdNhO0pIiCasiMSj04iJ1zQc10nhvB6_n1DfrHL738Vt8YIqYslSRnzS6EGYvddQ/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > < > https://secure-web.cisco.com/1s8F3GDfYbpR-qoBAK3osi7N-EY36OYvqKuqHr_Aj8pSWQ3cWbUEzu-vKr2J0W0RCW0J6HHCRpE7Om3d3-u6xtRozKWaz-P5fIWSa0oOZwQMPXePyol92F4HeOdky4GJEiGWZTmEkFip3q6Xo2NQgIx6AptmFtrrS2vp8cFxkf0kkpSi7KiHF1LnjJBKp68ErpYVJz2-jkoR4tqHKy3Dwbm85FU0dAFOHTIPZ5sm7_kSeQNZRnKTic_zSvggmmqgwwYRyxQe5L0AAdx9T1MAZWsLdNhO0pIiCasiMSj04iJ1zQc10nhvB6_n1DfrHL738Vt8YIqYslSRnzS6EGYvddQ/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> > . > Please note that this e-mail is not secure (encrypted). If you do not > wish to continue communication over unencrypted e-mail, please notify the > sender of this message immediately. Continuing to send or respond to > e-mail after receiving this message means you understand and accept this > risk and wish to continue to communicate over unencrypted e-mail. >
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