External Email - Use Caution I noticed all 292 images were processed in the same recon-all. I’m wondering if they are from the same subject.
If they are data from longitudinal study, you can process them with longitudinal pipeline - https://secure-web.cisco.com/1DWOFf8HXjewTlDOa5xZ86rZJrfN2Gj9YRwV79Y5tc02bjF1bZKUIUGPJilX4o2gwvaQE4gSTf22FcW8bxmoEK6tckr6lr47slov1v47TiBYt2OB7kLNsVYF8e1EJ-Rj0LhosG7bs9Lr7aGv5LH9-p9frssSGa5RxEKlUcJu7FGprWXkqNvin63GVMdjZOXNeg77kaSu0qCcLTvspy_wYthfv3y96BO1tb502D9KViGq0Kt373CLBKvESKZbo4HwpiKP1YotsAuashlkA2UdQkw/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FLongitudinalProcessing Best, Yujing From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Iman Kianian Sent: Saturday, August 26, 2023 9:52 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] mri_watershed Error while running recon-all External Email - Use Caution Hi there, I was trying to extract the hippocampus parts of a T1 MRI dataset with 292 samples as it is mentioned in the documentation ("MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1nDPXI5J4jwZAl4biV-62p60LDxcYoL5HoOu8ciGeukr-daTkNLAos6pzTU_ivS_hTeBcXxYb1nhNVynQ6WmxqtfWsNK2woqU2cqkmBHgX2QMV3qOBZsMD588H924UoZMonXno-pit9qdFJa-5KMTw-DtoJF_vtxDR0Cz0auoCKXb8-rGg_0bJlZlKw_vPFC7nXFedt6zPBEofAuwCEioT5w4K18k_eiqbWvH_bGHV5CrALrs5i1V2EvAXD0h5_ET6OPEOl8pjzcoCzcuzpj39Q/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FHippocampalSubfieldsAndNucleiOfAmygdala<https://secure-web.cisco.com/1BAyhN9FdUHAAqUD8DOQTWc8CqCVlTa3xgiGxxFItgCG2APPd1nEg4nE3AptgHfWColMe_ee-GG4i4us5pFR-e51GoSTb-V91YTdzNaKaTHiJURDzVAskrDzx4-OL41nRZUIXRxfqHTkxl3kOkQb2inZvcnrdhZWsuK6fu9M6-qXDo0PWGQXHRdlqYGBZkmVOJRcvcYSbe7LF4csk6Tjxpmj7Tl22CupnIdxYan7VkqsamjxZ9-3RYG6V2L0RDgMDPozCB--6uRxrY8gMdoT4jna17JZGlTlOnWIPASOwKZgtiBZQuemvhtgaduiq0rSSgjX8K3ik5Cg0NzHwpx_QxQ/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FHippocampalSubfieldsAndNucleiOfAmygdala>"). when I was trying to use the recon-all command, after almost 1 hour of processing I encountered this error: """ mri_watershed Error: GLOBAL region of the brain empty ! Command exited with non-zero status 1 """ I appreciate your time for helping me. Note that I attached the recon-all.log for your review if it is needed.
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